Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888445
Identifier: 15888445
GI number: 15888445
Start: 1093678
End: 1094625
Strand: Reverse
Name: 15888445
Synonym: Atu1105
Alternate gene names: NA
Gene position: 1094625-1093678 (Counterclockwise)
Preceding gene: 15888446
Following gene: 159184615
Centisome position: 38.52
GC content: 57.59
Gene sequence:
>948_bases ATGATGAATTTCGGAAAGTCGGCTTTGCGTGGCGCTGCTTTTGCCTTTGCGATTTTCGCCGTTCCCATGGCCGTTGTGCC TTATGCCGGCCAGGCCTTCGCCGACAGTACCGTCAAGATCGTCGTCAACAAGACGCCCATCACCAACGATGATATTGCAA GACGTGTTGCCTTCCTGAAGCTGCAGCGCCAGTCGGGCAATCTCAACGAAAAAGCTCGCGAACAGCTGGTCGACGAGGCT CTGAAGCGCGAAGAGATTGCGCGCGTGAAGATGTCGGTCAGTACGCAGGACGTCGATGCAGCCTTCGCGCGATTTGCCGG CAATAATAAAATGAAGCCCGAGCAACTGACAAAAGTTCTTGCACAGGCGGGTGTTGGCGCCGAGCACTTCAAAGCCTTCA TCGCCGTTCAGATGAGCTGGCCGCGCCTCGTCAACGCCCGTTATGGCGCCCGCGGCAAGATGTCGAACCAGGATCTCGTC ACCCGCCTGAAGGAACGCGGCGAAAAGCCCGTAACCACGGAATATTTTCTGCAGCAGGTCATCTTCGTCATCCCGGAAGC AAAGCGCAACGCCATCACCGGCAAGCGCAAGGCCGAGGCAGAAGCCTCGCGCAAGCGTTATCCTGGCTGCGACCAGGCCA TGAGCTTTGCCGCGACCATGCGTGACGTGGCGATCAAGGATCTCGGACGCATTCTCGCGCCGGAACTGCCGGAAGACTGG AAGGCGCTGGTGGAGAAAACCAAGGAAGGCGGCACCACCGGCACGCGTGTGACCGAGAAGGGCGTCGAATATCTGGCCAT CTGCAAGCAACGTCAGGTTTCCGACGACTATGCCGCGGAAATGGTGTTCAAGTCTGAAGACCTGATGAAGGCCAAGGACG GCGAAAACCCGAACGAGAAGAAATATATCGAGGAACTGCGCAAGAAGGCGCAGATCGTCAACACCTGA
Upstream 100 bases:
>100_bases GTGCAGGTCTGAAAAGCCGGGGAGTTGAATACTCCCCGCTTCGGGCGGAACAGATTGGCGGAACAGGGCAAGGACCCTGG CCGACGAAAGGGAGAAGCAT
Downstream 100 bases:
>100_bases TATTGATACGAGAGCCGGGTCTTTCCGTGACACATGCATCCCTGCCGCTTGCCCTGACCCAGGGAGATCCAGCCGGTATC GGCCCCGATATCGCCATCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidyl-Prolyl Cis-Trans Isomerase Protein; SurA Domain-Containing Protein; Peptidyl-Prolyl Cis-Trans Isomerase; SurA N-Terminal Domain Family; SurA N- Domain Family; PpiC-Type Peptidyl-Prolyl Cis-Trans Isomerase; Ppic-Type Ppiase Domain Protein; SurA N-Terminal Domain Family Protein; SurA Domain; Survival Protein SurA; SurA Domain Protein
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MMNFGKSALRGAAFAFAIFAVPMAVVPYAGQAFADSTVKIVVNKTPITNDDIARRVAFLKLQRQSGNLNEKAREQLVDEA LKREEIARVKMSVSTQDVDAAFARFAGNNKMKPEQLTKVLAQAGVGAEHFKAFIAVQMSWPRLVNARYGARGKMSNQDLV TRLKERGEKPVTTEYFLQQVIFVIPEAKRNAITGKRKAEAEASRKRYPGCDQAMSFAATMRDVAIKDLGRILAPELPEDW KALVEKTKEGGTTGTRVTEKGVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKDGENPNEKKYIEELRKKAQIVNT
Sequences:
>Translated_315_residues MMNFGKSALRGAAFAFAIFAVPMAVVPYAGQAFADSTVKIVVNKTPITNDDIARRVAFLKLQRQSGNLNEKAREQLVDEA LKREEIARVKMSVSTQDVDAAFARFAGNNKMKPEQLTKVLAQAGVGAEHFKAFIAVQMSWPRLVNARYGARGKMSNQDLV TRLKERGEKPVTTEYFLQQVIFVIPEAKRNAITGKRKAEAEASRKRYPGCDQAMSFAATMRDVAIKDLGRILAPELPEDW KALVEKTKEGGTTGTRVTEKGVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKDGENPNEKKYIEELRKKAQIVNT >Mature_315_residues MMNFGKSALRGAAFAFAIFAVPMAVVPYAGQAFADSTVKIVVNKTPITNDDIARRVAFLKLQRQSGNLNEKAREQLVDEA LKREEIARVKMSVSTQDVDAAFARFAGNNKMKPEQLTKVLAQAGVGAEHFKAFIAVQMSWPRLVNARYGARGKMSNQDLV TRLKERGEKPVTTEYFLQQVIFVIPEAKRNAITGKRKAEAEASRKRYPGCDQAMSFAATMRDVAIKDLGRILAPELPEDW KALVEKTKEGGTTGTRVTEKGVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKDGENPNEKKYIEELRKKAQIVNT
Specific function: Unknown
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35117; Mature: 35117
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNFGKSALRGAAFAFAIFAVPMAVVPYAGQAFADSTVKIVVNKTPITNDDIARRVAFLK CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEECCCCCCHHHHHHHHHHH LQRQSGNLNEKAREQLVDEALKREEIARVKMSVSTQDVDAAFARFAGNNKMKPEQLTKVL HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHH AQAGVGAEHFKAFIAVQMSWPRLVNARYGARGKMSNQDLVTRLKERGEKPVTTEYFLQQV HHHCCCHHHHHHHHHHEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH IFVIPEAKRNAITGKRKAEAEASRKRYPGCDQAMSFAATMRDVAIKDLGRILAPELPEDW HHHCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH KALVEKTKEGGTTGTRVTEKGVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKDGENPNEK HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCCCHH KYIEELRKKAQIVNT HHHHHHHHHHHHCCC >Mature Secondary Structure MMNFGKSALRGAAFAFAIFAVPMAVVPYAGQAFADSTVKIVVNKTPITNDDIARRVAFLK CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEECCCCCCHHHHHHHHHHH LQRQSGNLNEKAREQLVDEALKREEIARVKMSVSTQDVDAAFARFAGNNKMKPEQLTKVL HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHH AQAGVGAEHFKAFIAVQMSWPRLVNARYGARGKMSNQDLVTRLKERGEKPVTTEYFLQQV HHHCCCHHHHHHHHHHEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH IFVIPEAKRNAITGKRKAEAEASRKRYPGCDQAMSFAATMRDVAIKDLGRILAPELPEDW HHHCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH KALVEKTKEGGTTGTRVTEKGVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKDGENPNEK HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCCCHH KYIEELRKKAQIVNT HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA