Click here to switch to the map view.

The map label for this gene is yicC [C]

Identifier: 15888440

GI number: 15888440

Start: 1089547

End: 1090434

Strand: Direct

Name: yicC [C]

Synonym: Atu1100

Alternate gene names: 15888440

Gene position: 1089547-1090434 (Clockwise)

Preceding gene: 15888439

Following gene: 15888441

Centisome position: 38.34

GC content: 59.8

Gene sequence:

>888_bases
ATGACATTGCAATCGATGACCGGCTTTGCGCGCAGCGAAGGAACCTCCGGCCGTTACCGCTGGGCCTGGGAATTGCGTTC
TGTGAACGGCAAGGGGCTCGATGTGCGCCTGCGTCTGCCGACCGGTCTTGAAGCACTCGAAACCGGCCTGCGCGAAATTG
CGAGCGAGCATCTTTCCCGCGGCAATATTCAGGCGGGCCTGACGCTGGCGATTGCGGAAAACCGGCTTGAGGCCGTGATC
AACCGCGATGCGCTGGCCGCCGTTCTGGCACTCAAGAAGGAGCTTGGTGATGTCGTCGATGACAAGCCGCTGAGCTTCGA
TACCTTGCTCACTTTGCGCGGTCTGGTCGATTTTCGAGAGGCGGAAGACGACGCTGAAGCGCAGGCAGCGCGCAATGGTG
AGGTGCTTGCCGGTTTCGCCGCTGCCGTGGAAAAGCTGAAGGACATGCGCGAGCGGGAAGGGGCATCGCTGTTTGCTATC
CTCTCCGGCCATATCAACCGTATCGAGCAGCTCGTGGACATCATCGAGAATGATCCATCCCGCCAGCCCGAGCAGATCGC
GGCACGGCTCGCCCAGCAGATCGCCCTCATCGGTGACGGCATGCACGGGCTCGACCGTGACCGCCTGCATGCCGAGGCGG
CGCTGATCGCCACTAAGGCGGATCTGCGTGAAGAGATCGACCGGTTGCACGCCCATGTCCAGGCTTCACGCGAACTGTTG
GAGAATGGCGGACCTGTTGGCCGCAAGCTCGATTTTCTTGCACAGGAATTTAACCGCGAGTCGAATACAATCTGTTCCAA
ATCGAATGCCAGTGCGGTAACCGCAGCGGGCATAGAGTTGAAAGTGGTGATCGACCAGTTTCGCGAACAGGTCCAAAATC
TGGAGTAG

Upstream 100 bases:

>100_bases
CGGCGCCGAGGCGGAAAAACCTGCCAACAACTGATAATCTCGACCGGGCCTTGTCATCCACAAGGCCCGTTTTGCGCTGC
ATGACAGGGGGCTTCCAGAT

Downstream 100 bases:

>100_bases
ACCCCATGGTCCCGGTGAATAATTCTCCCGTCACGATTGCCCGTAGAGGGCTGATGCTGGTGATTTCTTCGCCATCGGGC
GCAGGCAAATCCACGATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTLQSMTGFARSEGTSGRYRWAWELRSVNGKGLDVRLRLPTGLEALETGLREIASEHLSRGNIQAGLTLAIAENRLEAVI
NRDALAAVLALKKELGDVVDDKPLSFDTLLTLRGLVDFREAEDDAEAQAARNGEVLAGFAAAVEKLKDMREREGASLFAI
LSGHINRIEQLVDIIENDPSRQPEQIAARLAQQIALIGDGMHGLDRDRLHAEAALIATKADLREEIDRLHAHVQASRELL
ENGGPVGRKLDFLAQEFNRESNTICSKSNASAVTAAGIELKVVIDQFREQVQNLE

Sequences:

>Translated_295_residues
MTLQSMTGFARSEGTSGRYRWAWELRSVNGKGLDVRLRLPTGLEALETGLREIASEHLSRGNIQAGLTLAIAENRLEAVI
NRDALAAVLALKKELGDVVDDKPLSFDTLLTLRGLVDFREAEDDAEAQAARNGEVLAGFAAAVEKLKDMREREGASLFAI
LSGHINRIEQLVDIIENDPSRQPEQIAARLAQQIALIGDGMHGLDRDRLHAEAALIATKADLREEIDRLHAHVQASRELL
ENGGPVGRKLDFLAQEFNRESNTICSKSNASAVTAAGIELKVVIDQFREQVQNLE
>Mature_294_residues
TLQSMTGFARSEGTSGRYRWAWELRSVNGKGLDVRLRLPTGLEALETGLREIASEHLSRGNIQAGLTLAIAENRLEAVIN
RDALAAVLALKKELGDVVDDKPLSFDTLLTLRGLVDFREAEDDAEAQAARNGEVLAGFAAAVEKLKDMREREGASLFAIL
SGHINRIEQLVDIIENDPSRQPEQIAARLAQQIALIGDGMHGLDRDRLHAEAALIATKADLREEIDRLHAHVQASRELLE
NGGPVGRKLDFLAQEFNRESNTICSKSNASAVTAAGIELKVVIDQFREQVQNLE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=296, Percent_Identity=33.1081081081081, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 32345; Mature: 32214

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLQSMTGFARSEGTSGRYRWAWELRSVNGKGLDVRLRLPTGLEALETGLREIASEHLSR
CCCHHHHCHHHCCCCCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC
GNIQAGLTLAIAENRLEAVINRDALAAVLALKKELGDVVDDKPLSFDTLLTLRGLVDFRE
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AEDDAEAQAARNGEVLAGFAAAVEKLKDMREREGASLFAILSGHINRIEQLVDIIENDPS
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RQPEQIAARLAQQIALIGDGMHGLDRDRLHAEAALIATKADLREEIDRLHAHVQASRELL
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENGGPVGRKLDFLAQEFNRESNTICSKSNASAVTAAGIELKVVIDQFREQVQNLE
HCCCCCCHHHHHHHHHHCCCCCCEECCCCCCEEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLQSMTGFARSEGTSGRYRWAWELRSVNGKGLDVRLRLPTGLEALETGLREIASEHLSR
CCHHHHCHHHCCCCCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHC
GNIQAGLTLAIAENRLEAVINRDALAAVLALKKELGDVVDDKPLSFDTLLTLRGLVDFRE
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AEDDAEAQAARNGEVLAGFAAAVEKLKDMREREGASLFAILSGHINRIEQLVDIIENDPS
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RQPEQIAARLAQQIALIGDGMHGLDRDRLHAEAALIATKADLREEIDRLHAHVQASRELL
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENGGPVGRKLDFLAQEFNRESNTICSKSNASAVTAAGIELKVVIDQFREQVQNLE
HCCCCCCHHHHHHHHHHCCCCCCEECCCCCCEEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]