Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yceG [C]
Identifier: 15888439
GI number: 15888439
Start: 1088260
End: 1089480
Strand: Direct
Name: yceG [C]
Synonym: Atu1099
Alternate gene names: 15888439
Gene position: 1088260-1089480 (Clockwise)
Preceding gene: 15888438
Following gene: 15888440
Centisome position: 38.3
GC content: 60.36
Gene sequence:
>1221_bases GTGAGCGATACGAATCAGAACAGCCAGGGACCATCAGGACAAAACGGCGCGGGCGAAGGCAATCGCGGCCCGATCATCCC AAAGTCCCCGACCGAGGCGCTGCGGCCGGAAAAAGTGCCGGCGCCGCCGAAGCGTTCCCGCAAGGCCCATGGCCAGCTGG TGATCTTCCTGAATTTTCTGATGACGCTTGCCGTTGCCGTCTGCGTGCTGGCCATTGCCGCCTTCTATTACATGATCAAT GCGTTTCAGGAGCCCGGTCCGCTCGAAACGAACACCCATTTCACCGTCCGCAACGGTGCTGGCCTCATCGAGATCGCCAA TAATCTCGAACGCAACGACATCATCTCCAACGCCCGCGTTTTCCGCCTCATGACCGGCAGCTATCTGCAGAAGGATCAGA CGCTGAAAACCGGCGAATATGAGATCAAGGCCGGCGCATCGATGAAGGACATCATGCTGCTGCTCGAATCCGGCAAATCG ATCCTTTATTCCGTATCGCTGCCGGAAGGCCTGACCGTAAAGCAGATGTTCGCGCGCCTTGCCGCGGACGAGGTGCTGGA TGGCGAACTGCCCGCGACGCTGCCACCCGAAGGCAGCCTGCGCCCGGATACCTATCGTTTCACCCGCGGCACCAAGCGCG AAGAAATCATCAGCCAGATGAGTGCGGCGCAGGACAAGCTGATCGACATGGTCTGGGAGCGGCGCGATCCCGACCTGCCG ATCAAGACCATCGAGGAATTCGTCACGCTCGCCTCGATCGTCGAGAAGGAAACCGGTAAGGATGACGAACGCGCCCATGT CGCCTCCGTCTTCTATAACCGCCTGAAGAAGGGCATGCGCCTGCAATCCGATCCGACGATCATCTACGGTCTGTTCGGTG GCGACGGAAAGCCGTCCGACCGGCCGATCTACCAGTCGGACCTGCAGAAGCAGACGCCGTTCAATACCTATGTCATCAAG GGCCTGCCGCCATCGCCCATCGCCAATCCGGGACGGGCAGCACTTGAGGCAGTCGCCAATCCATGGCGCACGGATGACCT TTATTTCGTGGCCGACGGCACCGGCGGCCACGTCTTTGCCAAGACGCTTGAAGAGCACAACGCCAATGTCCGCCGCTGGC GCAAGATCGAAGCCGAAAAGGCTGCTTCCGGCGGCAATCCCGATGTGGTCGTGGATGGTCAACCCGGCGGCGCCGAGGCG GAAAAACCTGCCAACAACTGA
Upstream 100 bases:
>100_bases CACGATATCTCCATGTGGTGCGGGACGGCATTCCGAACCTGTTTTTGCCGCATTACCTGCGCAAAAAGCGCTGACAACGC CGAACTGAAAAGGACCGACG
Downstream 100 bases:
>100_bases TAATCTCGACCGGGCCTTGTCATCCACAAGGCCCGTTTTGCGCTGCATGACAGGGGGCTTCCAGATATGACATTGCAATC GATGACCGGCTTTGCGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSDTNQNSQGPSGQNGAGEGNRGPIIPKSPTEALRPEKVPAPPKRSRKAHGQLVIFLNFLMTLAVAVCVLAIAAFYYMIN AFQEPGPLETNTHFTVRNGAGLIEIANNLERNDIISNARVFRLMTGSYLQKDQTLKTGEYEIKAGASMKDIMLLLESGKS ILYSVSLPEGLTVKQMFARLAADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIISQMSAAQDKLIDMVWERRDPDLP IKTIEEFVTLASIVEKETGKDDERAHVASVFYNRLKKGMRLQSDPTIIYGLFGGDGKPSDRPIYQSDLQKQTPFNTYVIK GLPPSPIANPGRAALEAVANPWRTDDLYFVADGTGGHVFAKTLEEHNANVRRWRKIEAEKAASGGNPDVVVDGQPGGAEA EKPANN
Sequences:
>Translated_406_residues MSDTNQNSQGPSGQNGAGEGNRGPIIPKSPTEALRPEKVPAPPKRSRKAHGQLVIFLNFLMTLAVAVCVLAIAAFYYMIN AFQEPGPLETNTHFTVRNGAGLIEIANNLERNDIISNARVFRLMTGSYLQKDQTLKTGEYEIKAGASMKDIMLLLESGKS ILYSVSLPEGLTVKQMFARLAADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIISQMSAAQDKLIDMVWERRDPDLP IKTIEEFVTLASIVEKETGKDDERAHVASVFYNRLKKGMRLQSDPTIIYGLFGGDGKPSDRPIYQSDLQKQTPFNTYVIK GLPPSPIANPGRAALEAVANPWRTDDLYFVADGTGGHVFAKTLEEHNANVRRWRKIEAEKAASGGNPDVVVDGQPGGAEA EKPANN >Mature_405_residues SDTNQNSQGPSGQNGAGEGNRGPIIPKSPTEALRPEKVPAPPKRSRKAHGQLVIFLNFLMTLAVAVCVLAIAAFYYMINA FQEPGPLETNTHFTVRNGAGLIEIANNLERNDIISNARVFRLMTGSYLQKDQTLKTGEYEIKAGASMKDIMLLLESGKSI LYSVSLPEGLTVKQMFARLAADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIISQMSAAQDKLIDMVWERRDPDLPI KTIEEFVTLASIVEKETGKDDERAHVASVFYNRLKKGMRLQSDPTIIYGLFGGDGKPSDRPIYQSDLQKQTPFNTYVIKG LPPSPIANPGRAALEAVANPWRTDDLYFVADGTGGHVFAKTLEEHNANVRRWRKIEAEKAASGGNPDVVVDGQPGGAEAE KPANN
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=312, Percent_Identity=36.2179487179487, Blast_Score=185, Evalue=5e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 44494; Mature: 44363
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTNQNSQGPSGQNGAGEGNRGPIIPKSPTEALRPEKVPAPPKRSRKAHGQLVIFLNFL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH MTLAVAVCVLAIAAFYYMINAFQEPGPLETNTHFTVRNGAGLIEIANNLERNDIISNARV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHCCCHH FRLMTGSYLQKDQTLKTGEYEIKAGASMKDIMLLLESGKSILYSVSLPEGLTVKQMFARL EEEHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHH AADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIISQMSAAQDKLIDMVWERRDPDLP HHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC IKTIEEFVTLASIVEKETGKDDERAHVASVFYNRLKKGMRLQSDPTIIYGLFGGDGKPSD HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEECCCCCEEEEEECCCCCCCC RPIYQSDLQKQTPFNTYVIKGLPPSPIANPGRAALEAVANPWRTDDLYFVADGTGGHVFA CCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHH KTLEEHNANVRRWRKIEAEKAASGGNPDVVVDGQPGGAEAEKPANN HHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure SDTNQNSQGPSGQNGAGEGNRGPIIPKSPTEALRPEKVPAPPKRSRKAHGQLVIFLNFL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH MTLAVAVCVLAIAAFYYMINAFQEPGPLETNTHFTVRNGAGLIEIANNLERNDIISNARV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHCCCHH FRLMTGSYLQKDQTLKTGEYEIKAGASMKDIMLLLESGKSILYSVSLPEGLTVKQMFARL EEEHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHH AADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIISQMSAAQDKLIDMVWERRDPDLP HHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC IKTIEEFVTLASIVEKETGKDDERAHVASVFYNRLKKGMRLQSDPTIIYGLFGGDGKPSD HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEECCCCCEEEEEECCCCCCCC RPIYQSDLQKQTPFNTYVIKGLPPSPIANPGRAALEAVANPWRTDDLYFVADGTGGHVFA CCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHH KTLEEHNANVRRWRKIEAEKAASGGNPDVVVDGQPGGAEAEKPANN HHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]