Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888393
Identifier: 15888393
GI number: 15888393
Start: 1044751
End: 1045269
Strand: Reverse
Name: 15888393
Synonym: Atu1051
Alternate gene names: NA
Gene position: 1045269-1044751 (Counterclockwise)
Preceding gene: 159184594
Following gene: 15888392
Centisome position: 36.78
GC content: 62.04
Gene sequence:
>519_bases ATGACCTGTATCGTCGTATCGCCGCTGTCGCGGATCGCCGAAATGGCCGTAAAGCACAAGGCCCGCGAAATGGTGACGCT GATTGCCAAGGAGCAGAGCTTTCACCGCCCGGCCGTCGTCGCCGCCGAGCGGCATCTGACACTTGCCATGAACGATATCG CCTTCAAGGGCACCGGCGATCTCATTGCACCCGATGATGCGCATGTGTTGAAGCTGATCGATTTTGCGGGGGAATGGGAT CAGTCCGCGCCGCTGCTCATCCATTGCTGGATGGGGATCTCGCGCTCGCCGGCCGCCGCTGTCATCGCCGCACTCAGCCT TTATCCTGATCAGGACGAGACTGAGCTTGCGCAACGCCTGCGCACCGTTTCACCCTATGTCACGCCCAATTCCCGCATCA TCGCCATCGGCGACCGGCTGCTGGGTCGCGAGGGTAGGCTTGTCAAAGCGATCAAGGCGATCGGCCGCGGGGCGGATACC GATGGCAACGTGCCTTTCGTGCTGCCGCTTGCCGGCTGA
Upstream 100 bases:
>100_bases TCGATATCATCCCCCTTCCCTCGACGGAGGCGCAAAGACTGTTCATCGCCCGCTTCGAGGCAATCGAGACGCTGCGCGTG ACCAGAACCGGGGGCGCAGT
Downstream 100 bases:
>100_bases GGCCCGATTTTGGGCGGAACCGCTGCGGCACCCATTCGTTACCAAATCTGAACGGCAATAGAATCACGGGATAATTCATG GAACAACAGGCAACCGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MTCIVVSPLSRIAEMAVKHKAREMVTLIAKEQSFHRPAVVAAERHLTLAMNDIAFKGTGDLIAPDDAHVLKLIDFAGEWD QSAPLLIHCWMGISRSPAAAVIAALSLYPDQDETELAQRLRTVSPYVTPNSRIIAIGDRLLGREGRLVKAIKAIGRGADT DGNVPFVLPLAG
Sequences:
>Translated_172_residues MTCIVVSPLSRIAEMAVKHKAREMVTLIAKEQSFHRPAVVAAERHLTLAMNDIAFKGTGDLIAPDDAHVLKLIDFAGEWD QSAPLLIHCWMGISRSPAAAVIAALSLYPDQDETELAQRLRTVSPYVTPNSRIIAIGDRLLGREGRLVKAIKAIGRGADT DGNVPFVLPLAG >Mature_171_residues TCIVVSPLSRIAEMAVKHKAREMVTLIAKEQSFHRPAVVAAERHLTLAMNDIAFKGTGDLIAPDDAHVLKLIDFAGEWDQ SAPLLIHCWMGISRSPAAAVIAALSLYPDQDETELAQRLRTVSPYVTPNSRIIAIGDRLLGREGRLVKAIKAIGRGADTD GNVPFVLPLAG
Specific function: Unknown
COG id: COG5350
COG function: function code R; Predicted protein tyrosine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18586; Mature: 18455
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCIVVSPLSRIAEMAVKHKAREMVTLIAKEQSFHRPAVVAAERHLTLAMNDIAFKGTGD CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECEEEECCCC LIAPDDAHVLKLIDFAGEWDQSAPLLIHCWMGISRSPAAAVIAALSLYPDQDETELAQRL EECCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHH RTVSPYVTPNSRIIAIGDRLLGREGRLVKAIKAIGRGADTDGNVPFVLPLAG HHCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECC >Mature Secondary Structure TCIVVSPLSRIAEMAVKHKAREMVTLIAKEQSFHRPAVVAAERHLTLAMNDIAFKGTGD EEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECEEEECCCC LIAPDDAHVLKLIDFAGEWDQSAPLLIHCWMGISRSPAAAVIAALSLYPDQDETELAQRL EECCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHH RTVSPYVTPNSRIIAIGDRLLGREGRLVKAIKAIGRGADTDGNVPFVLPLAG HHCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA