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The map label for this gene is ydeP [H]

Identifier: 15888340

GI number: 15888340

Start: 993685

End: 994074

Strand: Direct

Name: ydeP [H]

Synonym: Atu0997

Alternate gene names: 15888340

Gene position: 993685-994074 (Clockwise)

Preceding gene: 159184566

Following gene: 15888341

Centisome position: 34.97

GC content: 63.33

Gene sequence:

>390_bases
ATGTCGCGACCGCGCGCCAAGCTCACCGGCAACTTTCCCGGCTGCCCGGTGGAATCGGCCTTGAGTTTTCTCGATGGCAA
ATGGAAGGGCGTGATCCTCTATCACCTCATCAATGAGGGCACGCTGCGCTTCAACGAGCTGCGCCGCCACATCCCGAGCG
TCACCCAGCGCATGCTGACCAAGCAGCTGCGTGAGCTGGAAGAGGCGGGCCTGATTTCGCGCACCGTCTTTCCGGTGGTG
CCGCCGCGGGTGGATTATGCGCTGACGCCGCTTGGCGAAACGATGCGGCCGGTCATTTCGGCGTTGAAAAGCTGGGGCGA
CGCGCATGTCGTGTGCAAGAACGGCGAGAAATATACGCGGGCGCCCACGGTTGCGGAGAAGGCGGCCTGA

Upstream 100 bases:

>100_bases
AGTCTCCTTTGCTTGTTTGCGTGCCTCTTACTTGATACATATGAACATCAATCGCAAGAATGCACATTTTGTGGTGATAC
ATACAAAAAGGATACTGTAG

Downstream 100 bases:

>100_bases
GAGAAATTACGGGTAAAAGCAAGGTCGCGCGCGGGCCATTTTCATGGTGCGATGCAACACGGATTTGCCCCGATTGATGC
ATAATGCTGCAAACTCGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSRPRAKLTGNFPGCPVESALSFLDGKWKGVILYHLINEGTLRFNELRRHIPSVTQRMLTKQLRELEEAGLISRTVFPVV
PPRVDYALTPLGETMRPVISALKSWGDAHVVCKNGEKYTRAPTVAEKAA

Sequences:

>Translated_129_residues
MSRPRAKLTGNFPGCPVESALSFLDGKWKGVILYHLINEGTLRFNELRRHIPSVTQRMLTKQLRELEEAGLISRTVFPVV
PPRVDYALTPLGETMRPVISALKSWGDAHVVCKNGEKYTRAPTVAEKAA
>Mature_128_residues
SRPRAKLTGNFPGCPVESALSFLDGKWKGVILYHLINEGTLRFNELRRHIPSVTQRMLTKQLRELEEAGLISRTVFPVVP
PRVDYALTPLGETMRPVISALKSWGDAHVVCKNGEKYTRAPTVAEKAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=42.8571428571429, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14399; Mature: 14268

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPRAKLTGNFPGCPVESALSFLDGKWKGVILYHLINEGTLRFNELRRHIPSVTQRMLT
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
KQLRELEEAGLISRTVFPVVPPRVDYALTPLGETMRPVISALKSWGDAHVVCKNGEKYTR
HHHHHHHHCCCHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
APTVAEKAA
CCCHHHHCC
>Mature Secondary Structure 
SRPRAKLTGNFPGCPVESALSFLDGKWKGVILYHLINEGTLRFNELRRHIPSVTQRMLT
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
KQLRELEEAGLISRTVFPVVPPRVDYALTPLGETMRPVISALKSWGDAHVVCKNGEKYTR
HHHHHHHHCCCHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
APTVAEKAA
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]