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The map label for this gene is cycH [H]

Identifier: 15888316

GI number: 15888316

Start: 961700

End: 962872

Strand: Direct

Name: cycH [H]

Synonym: Atu0973

Alternate gene names: 15888316

Gene position: 961700-962872 (Clockwise)

Preceding gene: 159184557

Following gene: 15888317

Centisome position: 33.84

GC content: 64.96

Gene sequence:

>1173_bases
TTGAGCCTTATGTTCTGGATTGTCGTTGCGATATTGACGGCGGCTGTCGCCATCGTCCTGATGTACCCGCTGATGCGGAA
GACCGAGGCGCCGCAGACGCGCCGCGACGGTGAGGTTGCCGTTTATCGCGACCAGTTGGCCGAGCTGGACCGCGAACGTG
CCGCCGGCCTGATTGGCGAAAACGAAGCGGATTATGCCCGCGCCGAAATCGGCCGCCGCCTGCTGGCCGCCGCCGAGGCG
GAAGAGGTGATGGCGAAAGAGGCCCGGCCGCGCCGGCACAATCTCGCTGCCAGCCTCATAACCATCCTGCTGCCTGCACT
TGGCCTCTGTCTTTACATCTGGAACGGCAGTCCGGAGACGCCGGACATGCCGCTCGAGGCACGTCTTGAAAGCCCCGGCA
ACGACATGAACCTGCTGGTCGCGCGGGCCGAGAGGCATCTGGCGCAGAACCCGGAGGACGGTGGCGGCTGGGATGTTCTG
GCGCCGATCTATTTCAAGACGCTACGGCTTGGCGATGCCGAACTTGCCTATCGCAACGCGCTTCGTATTCTGGGCCCGAG
CCCAGAACGGTTGACGGGCCTTGGTGAAACGCTGGTGGCCGGCAATGACGGTATCGTCATTGAGGCGGCGCGGGATGCGT
TTGCTCAGGCCGAACAGCTGAAGCCCGGCAATCCGCGCGCCCGTTTTTATCTGGCGCTGTCGCTGGAGCAGACCGGCAAG
GCGGAAGAAGCGCGCGCGGCCTTTGCGGCGCTGGAGGCCGATGCGCCGGCTGGCGCACCCTGGCTGCCGCTGGTGCGTGA
ACATATTGCCCGGACCGGCGGCAAAGCGACGCCTGCAGCACCCGGCCCGACCGCGCAGGATATGGCTGCGGCCAATGACA
TGACGGCCAACGACCGGCAGGCGATGATCGAGGGCATGGTGGCAAGCCTCAATGCCAAGCTGAAGGATAACCCGGCCGAT
TTCGAAGGGTGGATGCGCCTTCTGCGCGCCTATTCCGTGCTGAAGAACGAGGCCAAGGCCGGTGAAGCCTTGCGGGCCGG
CCTGCAGGCTTTCCCGCCGGAGGGTGAAGAGGGCAGGCAGCTTCTGGCGCTGGCGAAGGAATTGGGCGTTTCCGCCGGAC
CGATCCGCATGGATGGGCAAAAGGATTCTGCGCCGCAGGGAGTGACGCAATGA

Upstream 100 bases:

>100_bases
GCACGGCGGAACAGCGAAACGCGATCTGCGGTGCGGCGTGATGTCTCAAATTCACGTCATCCCCGCGCTTCGTGTTTCCA
TGTGCCACGCATTCGAGTAA

Downstream 100 bases:

>100_bases
CCCGCAAACAGAAACGTCTGGCGATCATCGGCGGCGGCATGAGCTTCATCGTCGCGGCCGTGCTGCTGGTCATGTTCGCC
TTTGGCCAGTCGATCGCCTA

Product: cycH protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSLMFWIVVAILTAAVAIVLMYPLMRKTEAPQTRRDGEVAVYRDQLAELDRERAAGLIGENEADYARAEIGRRLLAAAEA
EEVMAKEARPRRHNLAASLITILLPALGLCLYIWNGSPETPDMPLEARLESPGNDMNLLVARAERHLAQNPEDGGGWDVL
APIYFKTLRLGDAELAYRNALRILGPSPERLTGLGETLVAGNDGIVIEAARDAFAQAEQLKPGNPRARFYLALSLEQTGK
AEEARAAFAALEADAPAGAPWLPLVREHIARTGGKATPAAPGPTAQDMAAANDMTANDRQAMIEGMVASLNAKLKDNPAD
FEGWMRLLRAYSVLKNEAKAGEALRAGLQAFPPEGEEGRQLLALAKELGVSAGPIRMDGQKDSAPQGVTQ

Sequences:

>Translated_390_residues
MSLMFWIVVAILTAAVAIVLMYPLMRKTEAPQTRRDGEVAVYRDQLAELDRERAAGLIGENEADYARAEIGRRLLAAAEA
EEVMAKEARPRRHNLAASLITILLPALGLCLYIWNGSPETPDMPLEARLESPGNDMNLLVARAERHLAQNPEDGGGWDVL
APIYFKTLRLGDAELAYRNALRILGPSPERLTGLGETLVAGNDGIVIEAARDAFAQAEQLKPGNPRARFYLALSLEQTGK
AEEARAAFAALEADAPAGAPWLPLVREHIARTGGKATPAAPGPTAQDMAAANDMTANDRQAMIEGMVASLNAKLKDNPAD
FEGWMRLLRAYSVLKNEAKAGEALRAGLQAFPPEGEEGRQLLALAKELGVSAGPIRMDGQKDSAPQGVTQ
>Mature_389_residues
SLMFWIVVAILTAAVAIVLMYPLMRKTEAPQTRRDGEVAVYRDQLAELDRERAAGLIGENEADYARAEIGRRLLAAAEAE
EVMAKEARPRRHNLAASLITILLPALGLCLYIWNGSPETPDMPLEARLESPGNDMNLLVARAERHLAQNPEDGGGWDVLA
PIYFKTLRLGDAELAYRNALRILGPSPERLTGLGETLVAGNDGIVIEAARDAFAQAEQLKPGNPRARFYLALSLEQTGKA
EEARAAFAALEADAPAGAPWLPLVREHIARTGGKATPAAPGPTAQDMAAANDMTANDRQAMIEGMVASLNAKLKDNPADF
EGWMRLLRAYSVLKNEAKAGEALRAGLQAFPPEGEEGRQLLALAKELGVSAGPIRMDGQKDSAPQGVTQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41955; Mature: 41824

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMFWIVVAILTAAVAIVLMYPLMRKTEAPQTRRDGEVAVYRDQLAELDRERAAGLIGE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCC
NEADYARAEIGRRLLAAAEAEEVMAKEARPRRHNLAASLITILLPALGLCLYIWNGSPET
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PDMPLEARLESPGNDMNLLVARAERHLAQNPEDGGGWDVLAPIYFKTLRLGDAELAYRNA
CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
LRILGPSPERLTGLGETLVAGNDGIVIEAARDAFAQAEQLKPGNPRARFYLALSLEQTGK
HHHCCCCHHHHHHCCCCEEECCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
AEEARAAFAALEADAPAGAPWLPLVREHIARTGGKATPAAPGPTAQDMAAANDMTANDRQ
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHH
AMIEGMVASLNAKLKDNPADFEGWMRLLRAYSVLKNEAKAGEALRAGLQAFPPEGEEGRQ
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LLALAKELGVSAGPIRMDGQKDSAPQGVTQ
HHHHHHHHCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SLMFWIVVAILTAAVAIVLMYPLMRKTEAPQTRRDGEVAVYRDQLAELDRERAAGLIGE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCC
NEADYARAEIGRRLLAAAEAEEVMAKEARPRRHNLAASLITILLPALGLCLYIWNGSPET
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PDMPLEARLESPGNDMNLLVARAERHLAQNPEDGGGWDVLAPIYFKTLRLGDAELAYRNA
CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
LRILGPSPERLTGLGETLVAGNDGIVIEAARDAFAQAEQLKPGNPRARFYLALSLEQTGK
HHHCCCCHHHHHHCCCCEEECCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
AEEARAAFAALEADAPAGAPWLPLVREHIARTGGKATPAAPGPTAQDMAAANDMTANDRQ
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHH
AMIEGMVASLNAKLKDNPADFEGWMRLLRAYSVLKNEAKAGEALRAGLQAFPPEGEEGRQ
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LLALAKELGVSAGPIRMDGQKDSAPQGVTQ
HHHHHHHHCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]