Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is cycG [H]
Identifier: 15888222
GI number: 15888222
Start: 876640
End: 877560
Strand: Direct
Name: cycG [H]
Synonym: Atu0882
Alternate gene names: 15888222
Gene position: 876640-877560 (Clockwise)
Preceding gene: 159184514
Following gene: 159184515
Centisome position: 30.85
GC content: 62.0
Gene sequence:
>921_bases ATGTCCTCCATCTGGACGAAGCTTGTTGGCGGGGCAGTGGTTGCGGCCATTGCGGGCTACGGAATTTTTGCCTGGGTTAC CGCACCAGAACGTCAGGCGCCGAGCCATTGGGTGAGCCTCGGTGAGCCGGATCTCGCCAATGGCGAAACCCTGTTCTGGG CCGGCGGCTGCGCAAGCTGTCACGCCGCACCCGATGCCAAGGGCGAGGGGCTGCTGACGCTTTCCGGCGGGCAGGCGCTG AAAAGCCCTTTCGGCACCTTTCACGTTCCCAATATTTCCTCTGATCCGCAGCACGGCATCGGCGGCTGGACGCTGGCGGA ATTCGGCGATGCGATGACGCGCGGCGTCGCCAAGAACGGCGAACATCTTTACCCGTCCTTTCCCTATGCTTCCTATGCCC GCATGACGCAGAAGGACATCAACGATCTCTTCGGTTATCTGAAGGTCCTGCCCGCCAGCCAGAATGATGCGCCGGATCAC GAGCTGCCTTTCCCCTTCAACCTGCGCATGGCGCTGGGCGGCTGGAAATTCCTTTATTTCGATCCCGCCGCACCGCCACG CGTCGAACTCGCCAATGCCAATGCCGAATTGCTGCGCGGCCAATATCTGGTGGAAGGGCCGGGCCATTGCGGCGAATGCC ATACGCCCCGCGACGCGCTCGGTGGTTTCCTTGCCGATAAATGGCTGGCCGGTGGCCCCAACCCGGAAGGCGAGGGCCGT ATTCCCGACATCACCCCCGGTTCGCAAAGCATCGGAAGCTGGGCCGAAGCCGATATTGCCAGCTATCTCGAAACCGGCTT CACGCCGGAATTTGACAGCGTCGGCGGCTCCATGGTCAAGGTGCAGCAGAACATGGCGCATCTGACCACCGAAGACCGTG ATGCGATCGCCGCCTATCTCAAGGCCATTCCGGCACGATAG
Upstream 100 bases:
>100_bases TCTGAAAAAATAATCGAAGCCTCTGAAAACGCCGCCCATCGGCGGCGTTTTTCGGCACGAAAGGCATCTGACCGGGTCAG GTGAGAATGGGGAGAGGGGT
Downstream 100 bases:
>100_bases CCCTCAGCCGAGGCAAGGCACGCGGGTCGAAAGCAGGCCTGCCATTGACTCCTGCATCTGCCCGACGGATAACATGTCCG TGATGGTTCCTTCCGGGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MSSIWTKLVGGAVVAAIAGYGIFAWVTAPERQAPSHWVSLGEPDLANGETLFWAGGCASCHAAPDAKGEGLLTLSGGQAL KSPFGTFHVPNISSDPQHGIGGWTLAEFGDAMTRGVAKNGEHLYPSFPYASYARMTQKDINDLFGYLKVLPASQNDAPDH ELPFPFNLRMALGGWKFLYFDPAAPPRVELANANAELLRGQYLVEGPGHCGECHTPRDALGGFLADKWLAGGPNPEGEGR IPDITPGSQSIGSWAEADIASYLETGFTPEFDSVGGSMVKVQQNMAHLTTEDRDAIAAYLKAIPAR
Sequences:
>Translated_306_residues MSSIWTKLVGGAVVAAIAGYGIFAWVTAPERQAPSHWVSLGEPDLANGETLFWAGGCASCHAAPDAKGEGLLTLSGGQAL KSPFGTFHVPNISSDPQHGIGGWTLAEFGDAMTRGVAKNGEHLYPSFPYASYARMTQKDINDLFGYLKVLPASQNDAPDH ELPFPFNLRMALGGWKFLYFDPAAPPRVELANANAELLRGQYLVEGPGHCGECHTPRDALGGFLADKWLAGGPNPEGEGR IPDITPGSQSIGSWAEADIASYLETGFTPEFDSVGGSMVKVQQNMAHLTTEDRDAIAAYLKAIPAR >Mature_305_residues SSIWTKLVGGAVVAAIAGYGIFAWVTAPERQAPSHWVSLGEPDLANGETLFWAGGCASCHAAPDAKGEGLLTLSGGQALK SPFGTFHVPNISSDPQHGIGGWTLAEFGDAMTRGVAKNGEHLYPSFPYASYARMTQKDINDLFGYLKVLPASQNDAPDHE LPFPFNLRMALGGWKFLYFDPAAPPRVELANANAELLRGQYLVEGPGHCGECHTPRDALGGFLADKWLAGGPNPEGEGRI PDITPGSQSIGSWAEADIASYLETGFTPEFDSVGGSMVKVQQNMAHLTTEDRDAIAAYLKAIPAR
Specific function: Particularly expressed when cells generate energy via aerobic respiration [H]
COG id: COG2010
COG function: function code C; Cytochrome c, mono- and diheme variants
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: NA
Molecular weight: Translated: 32544; Mature: 32413
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIWTKLVGGAVVAAIAGYGIFAWVTAPERQAPSHWVSLGEPDLANGETLFWAGGCASC CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC HAAPDAKGEGLLTLSGGQALKSPFGTFHVPNISSDPQHGIGGWTLAEFGDAMTRGVAKNG CCCCCCCCCEEEEECCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC EHLYPSFPYASYARMTQKDINDLFGYLKVLPASQNDAPDHELPFPFNLRMALGGWKFLYF CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE DPAAPPRVELANANAELLRGQYLVEGPGHCGECHTPRDALGGFLADKWLAGGPNPEGEGR CCCCCCCEEEECCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC IPDITPGSQSIGSWAEADIASYLETGFTPEFDSVGGSMVKVQQNMAHLTTEDRDAIAAYL CCCCCCCCHHHCCHHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHHHCCCHHHHHHHHH KAIPAR HHCCCC >Mature Secondary Structure SSIWTKLVGGAVVAAIAGYGIFAWVTAPERQAPSHWVSLGEPDLANGETLFWAGGCASC CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC HAAPDAKGEGLLTLSGGQALKSPFGTFHVPNISSDPQHGIGGWTLAEFGDAMTRGVAKNG CCCCCCCCCEEEEECCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC EHLYPSFPYASYARMTQKDINDLFGYLKVLPASQNDAPDHELPFPFNLRMALGGWKFLYF CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE DPAAPPRVELANANAELLRGQYLVEGPGHCGECHTPRDALGGFLADKWLAGGPNPEGEGR CCCCCCCEEEECCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC IPDITPGSQSIGSWAEADIASYLETGFTPEFDSVGGSMVKVQQNMAHLTTEDRDAIAAYL CCCCCCCCHHHCCHHHHHHHHHHHHCCCCCHHHCCCCEEEHHHHHHHHCCCHHHHHHHHH KAIPAR HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7543472 [H]