Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is mcpC [H]
Identifier: 15888213
GI number: 15888213
Start: 868168
End: 870525
Strand: Direct
Name: mcpC [H]
Synonym: Atu0872
Alternate gene names: 15888213
Gene position: 868168-870525 (Clockwise)
Preceding gene: 159184508
Following gene: 159184510
Centisome position: 30.55
GC content: 63.74
Gene sequence:
>2358_bases ATGTCTTTCAGCATTCGTAATATACTTGTTGGTTTTTTCCTCACCATCAGCCTTGCACTTGCCGGTTTCGTCGGCACGCA ATCGTGGCGCTCGGTCAATCGCGCCAGCGCCTTTTCCGAGGTCGCGCAGCTCGTCTCGCTGGACAAGCTTCTTTTCAACG CACTCCTGAATTTCCGCAGTGAACGTGGCGACAGCGCCACGGCGCTGACGCTCGATCCATCGAAGTCGGCTGGCAGCATC GCCAGTGTTGCGGCGGCACGCCAGAAGGTGGATGCCGCCATGACGGCATTCCTCACACAGTCTTCGTCGCTTGAAGATGC CAGGCTGCAAGGGCCGCTCAAACGCGTAAAGGATGTCTACGCACAGTTCGTTGAACTGCGAAAGAAGGTCGACGCCAATG TCTCGCAGCCGCTCGACCGGCGCGAGGGCGGTCTCGACAAGACCGTCATGACGCTCGGTGGCGATTTCCTCGCCTCGCTG GAAGCGGGTTCGACGGCGCTGGAGGGGGCTGTCCGCTCTCTCGATCAGGGCCAGACCGGTCTCATCCAGCTGCGCTCTTA CGGCTGGTCCGCCCGTGCGCTTGGCGGCAGCGCCACCGTTGTCCTCAACGCCGCCGTGGCGCAGAACCGGCCGCTCACCG CCCAGGAAATGCAGCAGCTCGGTGCCTTCGATGCCGGCGCGGCATTTGCGTGGAAGGCGACGGGTGATCTCGTCGCGCAT GAATCAACGCCGCAATCGCTCAAGGACATCTACGCCACTGCGGACAAGACCTATTTCAAGGGCGATTTCAACACTCAGCG CACCAAGCTCATCGAAGACCTCAACAATGGCCGCACGCCGACCTTTACCTTGGACAGCTGGCGCACCACCGTTACGGAAA ATCTCGGCACGATTGCCAAGATCGCCTCTGCCGCCATGGATGTCCTCGATGCCAATGCCGAAAAGGCAAAACAGGACGCC TTTATCGGTTCGGTGGTCTATCTGGCGGTCTTCATAGCCACACTGGCGCTCTGCATTGTCTCGCTCGCCGTCATCGTCGG CCGCGTCACCCGGCCGATCAGCCGCCTGACCAATGCGATGATGGCGCTTTCGGGCGGCAATCTTGCAATCGATATCGCCG GCGCAAAGCGCGGCGACGAGATCGGCGAGATGGCCCGTGCCGTGGAAGTCTTCCGCGAGGCGGCCATCCGCAACCGGCAG CTGGAGGCGGACGCCGTCGCCAACCGGGAGCAGGCCGAACGCGACCGCATCGAGCTGCAGCAGCGCGCTGAGGCCGAGGC CGAAGAACGGCTCAACCAGGCCACGGGTTCGCTGGCGGGCGGTCTTCGCCGTCTCGCCTCCGGTGACATGGTCTGCGAGA TCGCCACGCCGTTCGCACCGCAATTCGAAGCGCTGCGGCACGATTTCAACAGCTCCGTGCATCAGCTGCGTGAGGCGCTG ACGAGTGTCGGCCAGTCCGTGCAGACGGTGAATGGCGGCGCCCACGAGGTTTCCTCGGCCTCCGACGATCTTTCCCGCCG CACCGAACAGCAGGCCGCTTCGCTTGAAGAGACTGCGGCGGCACTGGAAGAGATCACCGCCAATGTCTCCGCCACCTCCA AGCGGGCTGGCGAGGCCCGGGACACGGTGCGGGAAGCAAGGACCAAGGCCGATCTTTCCGGCAAGGTGGTGCGCGATGCT GTCGCCGCCATGGAACGCATCGAACATTCCTCGCGCCAGATCGGCCAGATCATCGGCGTCATCGACGAAATCGCCTTCCA GACCAACCTTCTGGCGCTGAATGCGGGCGTCGAGGCGGCAAGGGCGGGCGATGCCGGCAAGGGCTTTGCCGTCGTTGCGC AGGAAGTTCGCGAACTGGCGCAGCGTTCCGCCAATGCGGCGAAGGAAATCAAGCAGCTCATCAACACCTCAGCCGTTGCG GTAGGTGAGGGCGTGAAGCTGGTTGCCGATACCGGCGTCGGGCTTTCCGAAATCGAGCAGCTGGTGCTGTCCGTCAACAG CCATATGGACGCCATCGCCACGGCGGCGCAGGAACAGTCTGCCGGTCTCTCCGAGGTCAATACCGCCGTCAACCACATGG ATCAGGCCACGCAGCAGAACGCCGCCATGGTCGAGGAAATGAATGCGGCCGGTGCCGGTCTCGCGCAGGAATGCGCCAAT CTCCAGGCCCTGCTTGCGCAGTTCCAGCTCGGCCAGCAGGCCTCGGCATTGCGGGAGACGGCACGGCATATGCAACGCGT CGCAAACCCTTCGCGCGCTCCGGCCGCACCCGTCGCAGCACCGCCACGGGCCCGTCCCGTTGCCACGCGCGGCAACGCGG CGCTAGCCGTGAAGGGTGATGACTGGACGGAGTTCTGA
Upstream 100 bases:
>100_bases CGCAAAAAAATCCCCAAAAAGATGGGGGAGTTTAATCCAATTTTAGACAAGCTTATTTTAGTTTGCGGCATCTTCATTTC CGGCTAGCGGGGGCCGCCAG
Downstream 100 bases:
>100_bases GGTTCGGAAGCTACGCCCGCGTCATCGAATGGCGCGGGCTACGTTGTTAACGAGGCTTTCTCCACCCGCAACGTCATCCT CAGGCTTGTCCCGAGGATCT
Product: methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: Methyl-accepting chemotaxis protein [H]
Number of amino acids: Translated: 785; Mature: 784
Protein sequence:
>785_residues MSFSIRNILVGFFLTISLALAGFVGTQSWRSVNRASAFSEVAQLVSLDKLLFNALLNFRSERGDSATALTLDPSKSAGSI ASVAAARQKVDAAMTAFLTQSSSLEDARLQGPLKRVKDVYAQFVELRKKVDANVSQPLDRREGGLDKTVMTLGGDFLASL EAGSTALEGAVRSLDQGQTGLIQLRSYGWSARALGGSATVVLNAAVAQNRPLTAQEMQQLGAFDAGAAFAWKATGDLVAH ESTPQSLKDIYATADKTYFKGDFNTQRTKLIEDLNNGRTPTFTLDSWRTTVTENLGTIAKIASAAMDVLDANAEKAKQDA FIGSVVYLAVFIATLALCIVSLAVIVGRVTRPISRLTNAMMALSGGNLAIDIAGAKRGDEIGEMARAVEVFREAAIRNRQ LEADAVANREQAERDRIELQQRAEAEAEERLNQATGSLAGGLRRLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREAL TSVGQSVQTVNGGAHEVSSASDDLSRRTEQQAASLEETAAALEEITANVSATSKRAGEARDTVREARTKADLSGKVVRDA VAAMERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSANAAKEIKQLINTSAVA VGEGVKLVADTGVGLSEIEQLVLSVNSHMDAIATAAQEQSAGLSEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECAN LQALLAQFQLGQQASALRETARHMQRVANPSRAPAAPVAAPPRARPVATRGNAALAVKGDDWTEF
Sequences:
>Translated_785_residues MSFSIRNILVGFFLTISLALAGFVGTQSWRSVNRASAFSEVAQLVSLDKLLFNALLNFRSERGDSATALTLDPSKSAGSI ASVAAARQKVDAAMTAFLTQSSSLEDARLQGPLKRVKDVYAQFVELRKKVDANVSQPLDRREGGLDKTVMTLGGDFLASL EAGSTALEGAVRSLDQGQTGLIQLRSYGWSARALGGSATVVLNAAVAQNRPLTAQEMQQLGAFDAGAAFAWKATGDLVAH ESTPQSLKDIYATADKTYFKGDFNTQRTKLIEDLNNGRTPTFTLDSWRTTVTENLGTIAKIASAAMDVLDANAEKAKQDA FIGSVVYLAVFIATLALCIVSLAVIVGRVTRPISRLTNAMMALSGGNLAIDIAGAKRGDEIGEMARAVEVFREAAIRNRQ LEADAVANREQAERDRIELQQRAEAEAEERLNQATGSLAGGLRRLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREAL TSVGQSVQTVNGGAHEVSSASDDLSRRTEQQAASLEETAAALEEITANVSATSKRAGEARDTVREARTKADLSGKVVRDA VAAMERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSANAAKEIKQLINTSAVA VGEGVKLVADTGVGLSEIEQLVLSVNSHMDAIATAAQEQSAGLSEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECAN LQALLAQFQLGQQASALRETARHMQRVANPSRAPAAPVAAPPRARPVATRGNAALAVKGDDWTEF >Mature_784_residues SFSIRNILVGFFLTISLALAGFVGTQSWRSVNRASAFSEVAQLVSLDKLLFNALLNFRSERGDSATALTLDPSKSAGSIA SVAAARQKVDAAMTAFLTQSSSLEDARLQGPLKRVKDVYAQFVELRKKVDANVSQPLDRREGGLDKTVMTLGGDFLASLE AGSTALEGAVRSLDQGQTGLIQLRSYGWSARALGGSATVVLNAAVAQNRPLTAQEMQQLGAFDAGAAFAWKATGDLVAHE STPQSLKDIYATADKTYFKGDFNTQRTKLIEDLNNGRTPTFTLDSWRTTVTENLGTIAKIASAAMDVLDANAEKAKQDAF IGSVVYLAVFIATLALCIVSLAVIVGRVTRPISRLTNAMMALSGGNLAIDIAGAKRGDEIGEMARAVEVFREAAIRNRQL EADAVANREQAERDRIELQQRAEAEAEERLNQATGSLAGGLRRLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREALT SVGQSVQTVNGGAHEVSSASDDLSRRTEQQAASLEETAAALEEITANVSATSKRAGEARDTVREARTKADLSGKVVRDAV AAMERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRSANAAKEIKQLINTSAVAV GEGVKLVADTGVGLSEIEQLVLSVNSHMDAIATAAQEQSAGLSEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECANL QALLAQFQLGQQASALRETARHMQRVANPSRAPAAPVAAPPRARPVATRGNAALAVKGDDWTEF
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein. Note=Localized at the flagellum-bearing pole of the swarmer cell [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788194, Length=299, Percent_Identity=43.8127090301003, Blast_Score=198, Evalue=1e-51, Organism=Escherichia coli, GI2367378, Length=320, Percent_Identity=44.6875, Blast_Score=196, Evalue=5e-51, Organism=Escherichia coli, GI1787690, Length=293, Percent_Identity=41.9795221843003, Blast_Score=195, Evalue=1e-50, Organism=Escherichia coli, GI1788195, Length=325, Percent_Identity=40.9230769230769, Blast_Score=191, Evalue=1e-49, Organism=Escherichia coli, GI1789453, Length=230, Percent_Identity=39.1304347826087, Blast_Score=144, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 83140; Mature: 83009
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS50885 HAMP ; PS50906 NIT ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSIRNILVGFFLTISLALAGFVGTQSWRSVNRASAFSEVAQLVSLDKLLFNALLNFRS CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERGDSATALTLDPSKSAGSIASVAAARQKVDAAMTAFLTQSSSLEDARLQGPLKRVKDVY CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AQFVELRKKVDANVSQPLDRREGGLDKTVMTLGGDFLASLEAGSTALEGAVRSLDQGQTG HHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCCCC LIQLRSYGWSARALGGSATVVLNAAVAQNRPLTAQEMQQLGAFDAGAAFAWKATGDLVAH HHHHHHCCCCHHCCCCCEEEEEEHHHHCCCCCCHHHHHHCCCCCCCCCEEEECCCCEEEC ESTPQSLKDIYATADKTYFKGDFNTQRTKLIEDLNNGRTPTFTLDSWRTTVTENLGTIAK CCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH IASAAMDVLDANAEKAKQDAFIGSVVYLAVFIATLALCIVSLAVIVGRVTRPISRLTNAM HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MALSGGNLAIDIAGAKRGDEIGEMARAVEVFREAAIRNRQLEADAVANREQAERDRIELQ HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHH QRAEAEAEERLNQATGSLAGGLRRLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH TSVGQSVQTVNGGAHEVSSASDDLSRRTEQQAASLEETAAALEEITANVSATSKRAGEAR HHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHH DTVREARTKADLSGKVVRDAVAAMERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHH RAGDAGKGFAVVAQEVRELAQRSANAAKEIKQLINTSAVAVGEGVKLVADTGVGLSEIEQ HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH LVLSVNSHMDAIATAAQEQSAGLSEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECAN HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LQALLAQFQLGQQASALRETARHMQRVANPSRAPAAPVAAPPRARPVATRGNAALAVKGD HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC DWTEF CCCCC >Mature Secondary Structure SFSIRNILVGFFLTISLALAGFVGTQSWRSVNRASAFSEVAQLVSLDKLLFNALLNFRS CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERGDSATALTLDPSKSAGSIASVAAARQKVDAAMTAFLTQSSSLEDARLQGPLKRVKDVY CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AQFVELRKKVDANVSQPLDRREGGLDKTVMTLGGDFLASLEAGSTALEGAVRSLDQGQTG HHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCCCC LIQLRSYGWSARALGGSATVVLNAAVAQNRPLTAQEMQQLGAFDAGAAFAWKATGDLVAH HHHHHHCCCCHHCCCCCEEEEEEHHHHCCCCCCHHHHHHCCCCCCCCCEEEECCCCEEEC ESTPQSLKDIYATADKTYFKGDFNTQRTKLIEDLNNGRTPTFTLDSWRTTVTENLGTIAK CCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH IASAAMDVLDANAEKAKQDAFIGSVVYLAVFIATLALCIVSLAVIVGRVTRPISRLTNAM HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MALSGGNLAIDIAGAKRGDEIGEMARAVEVFREAAIRNRQLEADAVANREQAERDRIELQ HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHH QRAEAEAEERLNQATGSLAGGLRRLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH TSVGQSVQTVNGGAHEVSSASDDLSRRTEQQAASLEETAAALEEITANVSATSKRAGEAR HHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHH DTVREARTKADLSGKVVRDAVAAMERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHH RAGDAGKGFAVVAQEVRELAQRSANAAKEIKQLINTSAVAVGEGVKLVADTGVGLSEIEQ HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH LVLSVNSHMDAIATAAQEQSAGLSEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECAN HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LQALLAQFQLGQQASALRETARHMQRVANPSRAPAAPVAAPPRARPVATRGNAALAVKGD HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC DWTEF CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1577276; 11259647 [H]