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The map label for this gene is ybaO [C]

Identifier: 15888082

GI number: 15888082

Start: 739774

End: 740226

Strand: Direct

Name: ybaO [C]

Synonym: Atu0740

Alternate gene names: 15888082

Gene position: 739774-740226 (Clockwise)

Preceding gene: 159184445

Following gene: 15888083

Centisome position: 26.03

GC content: 61.37

Gene sequence:

>453_bases
ATGGATGGGATCGACCGGAAACTACTGAACATTCTGCAGGGCGATGCCTCGCGCACCAATGTGGATATGGCCGATGAGGT
GGGGTTGTCTCCTTCCAGCTGCCTGCGCCGCCTCCAGCGCCTGTGCGCATCCGGCGTGATCGACCGCATTGTCGCGATCC
TTAACCCCGCCAAGGCGGGACGCGTCCTCAAGGCGCTGGTGACGGTGGAGCTGAAACTGCACGGCGAGCAGCATATGCGC
CGCTTTCTGGACATTGCGAGCGCCGAAGAGGCCGTATCCCACGCCTATGCGGTCACCGGCGCAACCGATGTCGTGCTGAT
GCTGCGGCTGCGCGATATGGAGGAATTCGACGCCCTGTGTGACCGGCTTTTCCGCGACCAGCACAATGTCGCGCGCTTCT
TCACCATGGTCGTCATCAAGACGGCGAAAGAAGAAACGGCGATCCGGCTTTAA

Upstream 100 bases:

>100_bases
GCCCCTCTTCTCTAGGCCGAAGCCTTTCGCATTTGTGGTCAAAGATTGCATTCTCTTGCAATTTTATTGCAAATGAACTC
AAGAGAGCTAAGCTGCCAAC

Downstream 100 bases:

>100_bases
CCGGAACCGTCGCGGTTTTTCAGAAAGGTAATTTCCAGATGGCGCCTCGCATTAAACTGAAAATCCTGAATGGTTCCTAC
GGGATAGCCCGGCTTTCCGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MDGIDRKLLNILQGDASRTNVDMADEVGLSPSSCLRRLQRLCASGVIDRIVAILNPAKAGRVLKALVTVELKLHGEQHMR
RFLDIASAEEAVSHAYAVTGATDVVLMLRLRDMEEFDALCDRLFRDQHNVARFFTMVVIKTAKEETAIRL

Sequences:

>Translated_150_residues
MDGIDRKLLNILQGDASRTNVDMADEVGLSPSSCLRRLQRLCASGVIDRIVAILNPAKAGRVLKALVTVELKLHGEQHMR
RFLDIASAEEAVSHAYAVTGATDVVLMLRLRDMEEFDALCDRLFRDQHNVARFFTMVVIKTAKEETAIRL
>Mature_150_residues
MDGIDRKLLNILQGDASRTNVDMADEVGLSPSSCLRRLQRLCASGVIDRIVAILNPAKAGRVLKALVTVELKLHGEQHMR
RFLDIASAEEAVSHAYAVTGATDVVLMLRLRDMEEFDALCDRLFRDQHNVARFFTMVVIKTAKEETAIRL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=123, Percent_Identity=31.7073170731707, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787116, Length=144, Percent_Identity=31.25, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16749; Mature: 16749

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGIDRKLLNILQGDASRTNVDMADEVGLSPSSCLRRLQRLCASGVIDRIVAILNPAKAG
CCCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RVLKALVTVELKLHGEQHMRRFLDIASAEEAVSHAYAVTGATDVVLMLRLRDMEEFDALC
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHH
DRLFRDQHNVARFFTMVVIKTAKEETAIRL
HHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDGIDRKLLNILQGDASRTNVDMADEVGLSPSSCLRRLQRLCASGVIDRIVAILNPAKAG
CCCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RVLKALVTVELKLHGEQHMRRFLDIASAEEAVSHAYAVTGATDVVLMLRLRDMEEFDALC
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHH
DRLFRDQHNVARFFTMVVIKTAKEETAIRL
HHHHHCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]