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The map label for this gene is rsmD [H]

Identifier: 15888033

GI number: 15888033

Start: 687122

End: 687679

Strand: Direct

Name: rsmD [H]

Synonym: Atu0690

Alternate gene names: 15888033

Gene position: 687122-687679 (Clockwise)

Preceding gene: 15888032

Following gene: 159184420

Centisome position: 24.18

GC content: 62.54

Gene sequence:

>558_bases
ATGCGGATCGTAGGCGGTGAGTTCCGCGGCCGGACACTGGCCGCGCCGAAATCGAATTCCATTCGTCCAACCATCGACAG
GACGCGGGAAAGCCTCTTTAACATCCTGAGCCACGCCTATCCGGAAAGTCTTGACGGTACGCGCGTGCTGGACGTTTTTG
CCGGAACCGGCGCGGTGGGGCTGGAAGCCCTGTCGCGCGGCTGTCGGGTGGCGCTCTTCGTCGAAAACGGCGTCGAGGGC
AGGGGACTGCTCTGGGAAAACATCGATGCGCTCGGCCTGCATGGCCGCGCCCGTATCCTGCGGCGTGACGCCACCAAGCT
CGGTGGCGTCAACAATATCGAGCCCTTCGATCTTCTCTTCGCCGATCCGCCCTATGGCCATGGCCATGGCGAGAAGGCTT
TCGCTGCAGCCCATGCCGGCGGCTGGCTGACATCAGGCGCGCTCGCCATTCTGGAAGAGCGCGGCGATGTGACGGTCACG
GTCGAGCCGGTATTCAAGCTGCTCGAAAGCCGGATTTTCGGTGATACCAAGATGCATTTCTACCGCTACGAGCCCTGA

Upstream 100 bases:

>100_bases
GGCAAGGGTAAAGGCCCCGGTGGCAATGGCCCCGGCGGCGGCAAGCCGGGCGGCAAAGGCCCGGGTGGCAAACCTTCTGG
TGGCAGGGGAATGACACGTA

Downstream 100 bases:

>100_bases
CGGGAGCCTTCCCGTCACGCCACGGTCTTGTCTTGTTTGCGCAATAGGCAGAGCCTTTGCCGTGGTAATCTTTTAGGGTG
TTTCGCATGGAGCAGGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHAYPESLDGTRVLDVFAGTGAVGLEALSRGCRVALFVENGVEG
RGLLWENIDALGLHGRARILRRDATKLGGVNNIEPFDLLFADPPYGHGHGEKAFAAAHAGGWLTSGALAILEERGDVTVT
VEPVFKLLESRIFGDTKMHFYRYEP

Sequences:

>Translated_185_residues
MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHAYPESLDGTRVLDVFAGTGAVGLEALSRGCRVALFVENGVEG
RGLLWENIDALGLHGRARILRRDATKLGGVNNIEPFDLLFADPPYGHGHGEKAFAAAHAGGWLTSGALAILEERGDVTVT
VEPVFKLLESRIFGDTKMHFYRYEP
>Mature_185_residues
MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHAYPESLDGTRVLDVFAGTGAVGLEALSRGCRVALFVENGVEG
RGLLWENIDALGLHGRARILRRDATKLGGVNNIEPFDLLFADPPYGHGHGEKAFAAAHAGGWLTSGALAILEERGDVTVT
VEPVFKLLESRIFGDTKMHFYRYEP

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=185, Percent_Identity=35.6756756756757, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 20188; Mature: 20188

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHAYPESLDGTRVLDVFAGTGAVG
CEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH
LEALSRGCRVALFVENGVEGRGLLWENIDALGLHGRARILRRDATKLGGVNNIEPFDLLF
HHHHHCCCEEEEEEECCCCCCCEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEEEE
ADPPYGHGHGEKAFAAAHAGGWLTSGALAILEERGDVTVTVEPVFKLLESRIFGDTKMHF
ECCCCCCCCCCHHHHHHHCCCCHHCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEE
YRYEP
EEECC
>Mature Secondary Structure
MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHAYPESLDGTRVLDVFAGTGAVG
CEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH
LEALSRGCRVALFVENGVEGRGLLWENIDALGLHGRARILRRDATKLGGVNNIEPFDLLF
HHHHHCCCEEEEEEECCCCCCCEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEEEE
ADPPYGHGHGEKAFAAAHAGGWLTSGALAILEERGDVTVTVEPVFKLLESRIFGDTKMHF
ECCCCCCCCCCHHHHHHHCCCCHHCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEE
YRYEP
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]