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The map label for this gene is rluB [C]

Identifier: 15888032

GI number: 15888032

Start: 685132

End: 687141

Strand: Direct

Name: rluB [C]

Synonym: Atu0689

Alternate gene names: 15888032

Gene position: 685132-687141 (Clockwise)

Preceding gene: 159184419

Following gene: 15888033

Centisome position: 24.11

GC content: 65.37

Gene sequence:

>2010_bases
ATGACTTTTAAAGACAAGCCGAAGCGTGACGGCGGCAAAACTTTTGGCGGCGACAGGAAGCCGAAAGGCCCCGGCAAACC
CGCTGCAGAGCGTGAAAAGAAACCGGCGCAAGCCAAGGCTGCGCCCGCTTCTGCCGCCACGGCCGAAGTGGTTGGTGCCG
GCAAGCCCGAGCGTATCTCGAAAATCATGGCGCGCGCCGGCGTTGCCTCGCGCCGCGATGTCGAGCGCATGATCATGGAA
GGCCGCGTGTCGCTGAACGGCGTCTTGCTGGATACGCCGGTGGTCAACGCCACGCTCTCCGACAAGATCGAAGTGGACGG
CATGCCGATTCGCGGTGCGGAGCGCACCCGCCTCTGGCTCTACCACAAGCCCGCCGGCCTGGTGACGACCAATTCCGACC
CGGAAGGCCGCCCGACCGTTTTCGATAATCTGCCGGGTGAACTGCCGCGCGTGCTCTCCATCGGCCGCCTCGATATCAAT
ACAGAAGGCCTGCTGCTGCTCACCAATGATGGCGGCCTTTCCCGCGTGCTGGAACTGCCGACCACCGGCTGGCTGCGCCG
TTACCGCGTGCGCGCCCATGGCGAGGTCGATCAGGCAGCACTGGACAAGCTGAAGGACGGCATTGCCGTTGACGGCGTGC
TTTATGGCGCGATCGACGCAACGCTCGACCGTACCCAGGGCCACAATGTCTGGATCACCATGGGTCTGCGCGAAGGCAAG
AACCGCGAAATCAAGAACGTGCTCGGCGCGCTCGGTCTTGAGGTTAACCGCCTGATCCGCATTTCCTATGGCCCGTTCCA
GCTGGGTGATCTGCCCGAGGGCAAGGTGCTGGAAGTGCGCGGCCGCATGCTGCGTGACCAGCTTGGCCCGCGCCTGATCG
AAGAGGCCGGCGCCAATTTCGACGCGCCGATCTACAATACATCTGTCGACGATGAGGAAGAGGCGCCGGCTAAGCGCGCC
AAGTCCGAATGGGCAAAGAGCGACGCGCCTGAGGGCAAGCCGCGTTTTGAAAAAGCAGCCGGCAAGCCGGAAGACCGCCG
CGAAAAGGCGCTCGGCCGTCTGGATACCAAGCGCAGCGACAAGCCCGCTGGCAAGTTTGGCGCCAAGCCTGCCGGAAAAT
TCGGTGGCAAGGGCCGCAATGACGACGAGGGCGATGATCGTCGCCCCCGCCCGCCCGCCGGCACCAGCCGCACCGCCAAT
GTCTGGATGGCACCTGGCGCAAAGCCCACCCGCGATGGCAAGGAACGCAAGTCGTCAGCCCGCGCTGAAGCTGAAAGCCT
GTTCAAGAAGCCGTCTGCGCAGGATGAAGCCCGCCGTAACGTCGTGCGGCATGCTGACGCCGAAGGCGAGTGGATTCGTT
CGGACTCCCCCCGTGAAGAAGAAGGTGGCCGCGGACGCGGTGACCGTCCTGGCCGCGGCGAAAAGAGCTTTGGCGATCGC
GGTGGACGCGGCGGCAAACCTTTTGGCGACAGACCCTCCGGCGACCGGCCATTCCGGGATCGCCCCCGCGAAGACGGCGA
TCGCCCCCGTGGGGATCGACCTGCACGCGGAACAAAGAGCTTCGGTGATCGCCCCGCACGCGGCGACAAACCCTTCGGTG
ACCGTCCGTTCCGTGACCGGCCTCGCGAAGACGGCGATCGCCCACGCAGCGACCGTCCGCGTGGCGAGAAGAGTTTTGGC
GATCGTACCGCGCGTGGCGAAAAGCCATTCAGCGAACGCCCGTTCCGTGACAAGCCCCGCGAAGAGGGAGATCGTCCCGG
CAGTGATCGTCCGCGCGGTGACCGGCCTTTCGGCGACAAGCCCAGAGGCGGTAAACCCGGCGGCAGGCCCGCATCGGGCA
AGCCGTCCTTCGGCAAATCCGGCGAGCGTGGCGAACGCTCCGGTTTTTCGGGCAAGGGTAAAGGCCCCGGTGGCAATGGC
CCCGGCGGCGGCAAGCCGGGCGGCAAAGGCCCGGGTGGCAAACCTTCTGGTGGCAGGGGAATGACACGTAATGCGGATCG
TAGGCGGTGA

Upstream 100 bases:

>100_bases
AGTTCCATGAAATGCGTCCTTTCGGCCATTGCGGTTCAATTTCCTCTTAACCCTTGTGCTTGGACCTGATAGGACAGCCC
AAACAACAGGCAAATAGCAA

Downstream 100 bases:

>100_bases
GTTCCGCGGCCGGACACTGGCCGCGCCGAAATCGAATTCCATTCGTCCAACCATCGACAGGACGCGGGAAAGCCTCTTTA
ACATCCTGAGCCACGCCTAT

Product: ribosomal large subunit pseudouridine synthase B

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 669; Mature: 668

Protein sequence:

>669_residues
MTFKDKPKRDGGKTFGGDRKPKGPGKPAAEREKKPAQAKAAPASAATAEVVGAGKPERISKIMARAGVASRRDVERMIME
GRVSLNGVLLDTPVVNATLSDKIEVDGMPIRGAERTRLWLYHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDIN
TEGLLLLTNDGGLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGHNVWITMGLREGK
NREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVRGRMLRDQLGPRLIEEAGANFDAPIYNTSVDDEEEAPAKRA
KSEWAKSDAPEGKPRFEKAAGKPEDRREKALGRLDTKRSDKPAGKFGAKPAGKFGGKGRNDDEGDDRRPRPPAGTSRTAN
VWMAPGAKPTRDGKERKSSARAEAESLFKKPSAQDEARRNVVRHADAEGEWIRSDSPREEEGGRGRGDRPGRGEKSFGDR
GGRGGKPFGDRPSGDRPFRDRPREDGDRPRGDRPARGTKSFGDRPARGDKPFGDRPFRDRPREDGDRPRSDRPRGEKSFG
DRTARGEKPFSERPFRDKPREEGDRPGSDRPRGDRPFGDKPRGGKPGGRPASGKPSFGKSGERGERSGFSGKGKGPGGNG
PGGGKPGGKGPGGKPSGGRGMTRNADRRR

Sequences:

>Translated_669_residues
MTFKDKPKRDGGKTFGGDRKPKGPGKPAAEREKKPAQAKAAPASAATAEVVGAGKPERISKIMARAGVASRRDVERMIME
GRVSLNGVLLDTPVVNATLSDKIEVDGMPIRGAERTRLWLYHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDIN
TEGLLLLTNDGGLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGHNVWITMGLREGK
NREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVRGRMLRDQLGPRLIEEAGANFDAPIYNTSVDDEEEAPAKRA
KSEWAKSDAPEGKPRFEKAAGKPEDRREKALGRLDTKRSDKPAGKFGAKPAGKFGGKGRNDDEGDDRRPRPPAGTSRTAN
VWMAPGAKPTRDGKERKSSARAEAESLFKKPSAQDEARRNVVRHADAEGEWIRSDSPREEEGGRGRGDRPGRGEKSFGDR
GGRGGKPFGDRPSGDRPFRDRPREDGDRPRGDRPARGTKSFGDRPARGDKPFGDRPFRDRPREDGDRPRSDRPRGEKSFG
DRTARGEKPFSERPFRDKPREEGDRPGSDRPRGDRPFGDKPRGGKPGGRPASGKPSFGKSGERGERSGFSGKGKGPGGNG
PGGGKPGGKGPGGKPSGGRGMTRNADRRR
>Mature_668_residues
TFKDKPKRDGGKTFGGDRKPKGPGKPAAEREKKPAQAKAAPASAATAEVVGAGKPERISKIMARAGVASRRDVERMIMEG
RVSLNGVLLDTPVVNATLSDKIEVDGMPIRGAERTRLWLYHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDINT
EGLLLLTNDGGLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGHNVWITMGLREGKN
REIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVRGRMLRDQLGPRLIEEAGANFDAPIYNTSVDDEEEAPAKRAK
SEWAKSDAPEGKPRFEKAAGKPEDRREKALGRLDTKRSDKPAGKFGAKPAGKFGGKGRNDDEGDDRRPRPPAGTSRTANV
WMAPGAKPTRDGKERKSSARAEAESLFKKPSAQDEARRNVVRHADAEGEWIRSDSPREEEGGRGRGDRPGRGEKSFGDRG
GRGGKPFGDRPSGDRPFRDRPREDGDRPRGDRPARGTKSFGDRPARGDKPFGDRPFRDRPREDGDRPRSDRPRGEKSFGD
RTARGEKPFSERPFRDKPREEGDRPGSDRPRGDRPFGDKPRGGKPGGRPASGKPSFGKSGERGERSGFSGKGKGPGGNGP
GGGKPGGKGPGGKPSGGRGMTRNADRRR

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=225, Percent_Identity=39.5555555555556, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI87081838, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790453, Length=226, Percent_Identity=28.7610619469027, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 72546; Mature: 72415

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKDKPKRDGGKTFGGDRKPKGPGKPAAEREKKPAQAKAAPASAATAEVVGAGKPERIS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHH
KIMARAGVASRRDVERMIMEGRVSLNGVLLDTPVVNATLSDKIEVDGMPIRGAERTRLWL
HHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEE
YHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDINTEGLLLLTNDGGLSRVLELP
EECCCCEEECCCCCCCCCCHHCCCCCHHHHHHHCCCEEECCCCEEEEECCCCHHHHHHCC
TTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGHNVWITMGLREGK
CHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCEEHHHHHHHHHHCCCCEEEEEEECCCCC
NREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVRGRMLRDQLGPRLIEEAGANF
CHHHHHHHHHHCCCEEEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
DAPIYNTSVDDEEEAPAKRAKSEWAKSDAPEGKPRFEKAAGKPEDRREKALGRLDTKRSD
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCC
KPAGKFGAKPAGKFGGKGRNDDEGDDRRPRPPAGTSRTANVWMAPGAKPTRDGKERKSSA
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHH
RAEAESLFKKPSAQDEARRNVVRHADAEGEWIRSDSPREEEGGRGRGDRPGRGEKSFGDR
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHCCCCCCCCCCCCCCCCCCCC
GGRGGKPFGDRPSGDRPFRDRPREDGDRPRGDRPARGTKSFGDRPARGDKPFGDRPFRDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
PREDGDRPRSDRPRGEKSFGDRTARGEKPFSERPFRDKPREEGDRPGSDRPRGDRPFGDK
CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
PRGGKPGGRPASGKPSFGKSGERGERSGFSGKGKGPGGNGPGGGKPGGKGPGGKPSGGRG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MTRNADRRR
CCCCCCCCC
>Mature Secondary Structure 
TFKDKPKRDGGKTFGGDRKPKGPGKPAAEREKKPAQAKAAPASAATAEVVGAGKPERIS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHH
KIMARAGVASRRDVERMIMEGRVSLNGVLLDTPVVNATLSDKIEVDGMPIRGAERTRLWL
HHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEE
YHKPAGLVTTNSDPEGRPTVFDNLPGELPRVLSIGRLDINTEGLLLLTNDGGLSRVLELP
EECCCCEEECCCCCCCCCCHHCCCCCHHHHHHHCCCEEECCCCEEEEECCCCHHHHHHCC
TTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGHNVWITMGLREGK
CHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCEEHHHHHHHHHHCCCCEEEEEEECCCCC
NREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVRGRMLRDQLGPRLIEEAGANF
CHHHHHHHHHHCCCEEEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
DAPIYNTSVDDEEEAPAKRAKSEWAKSDAPEGKPRFEKAAGKPEDRREKALGRLDTKRSD
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCC
KPAGKFGAKPAGKFGGKGRNDDEGDDRRPRPPAGTSRTANVWMAPGAKPTRDGKERKSSA
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHH
RAEAESLFKKPSAQDEARRNVVRHADAEGEWIRSDSPREEEGGRGRGDRPGRGEKSFGDR
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHCCCCCCCCCCCCCCCCCCCC
GGRGGKPFGDRPSGDRPFRDRPREDGDRPRGDRPARGTKSFGDRPARGDKPFGDRPFRDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
PREDGDRPRSDRPRGEKSFGDRTARGEKPFSERPFRDKPREEGDRPGSDRPRGDRPFGDK
CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
PRGGKPGGRPASGKPSFGKSGERGERSGFSGKGKGPGGNGPGGGKPGGKGPGGKPSGGRG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MTRNADRRR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]