Click here to switch to the map view.

The map label for this gene is 15887829

Identifier: 15887829

GI number: 15887829

Start: 471433

End: 472185

Strand: Direct

Name: 15887829

Synonym: Atu0482

Alternate gene names: NA

Gene position: 471433-472185 (Clockwise)

Preceding gene: 159184331

Following gene: 159184333

Centisome position: 16.59

GC content: 58.83

Gene sequence:

>753_bases
ATGACGCAAAAAATCGGGACTTTTGTAGACCGGATCAACAACCGGCTGGTGCGGTATTTTCCGGGACCGGCGGTGCGGAT
CGAAAAATCCGAACCGATCGTGTCCTTCACATTCGACGATGTACCGGCCACCGCCTGGACGAAGGGCGCGCGCATCCTGG
AAAACGAGGGCGTTTGCGGAACGTTTTACATCGCCGGCACCTTTATCGACAGGCACGACGGACAGCAGGAGATGATTTCC
GCCAAAGGCTGTTCGGAACTGGCAGCGGCCGGCCATGAGCTTGCCTGCCACACCTTTTCCCATCGCAAACTCTCGAGCTT
TTCACGACGGGCGCTTGAAGAAGATCTCGAGCGCAATGACAGCGTTTTGGGTGCGTTCGACGAAAATCGGCACAGCCGAA
ATTTCTCCGTTCCTTTCGGCATGGCCTCACCGGTCATGCAGCCCCTGCTGCGGCGCCGGTTCAGGACGACACGCGGCATC
ATGCCCGGCATCAACCGGGACAGTGTCGACCCGCATAATCTTGCCGCAGTCGAGTTGCGTGCGGATCAGAGCTACCTCGA
TGCGGCCGACCGCTGGCTTGAGGATGTTTTGCAAAAAGGCGGCTGGCTCATCATCTTCACCCATGATGTTTCACCGACAC
CAAGCTTTTACGGCTGCCCGGAAGACAGATTTCAGGGCCTCGTCCGCAAGGCGGCGTCCGGCGGTGCGAAGATCATGACG
GTCGATGCCGCGGCAAGGACACTCGGCCTGTAA

Upstream 100 bases:

>100_bases
TTTGGTCTTCTCTGCTGATCGCGGTCTATTGTTTGAGGCATCAGGCGCACGACATACTTGAACAGGGGCAGTAATTTGCA
GACAGGCCGGGGGGCTTTGT

Downstream 100 bases:

>100_bases
AGAAATATTCTCAGCGCGTACTCGGGCGATATTGCGGAAACCTCTGTCCGCAATTGCGAACCTATTGGCTGGCCCAGATG
ATGCGGGCAATCCACTCCAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Domain Protein; Oligosaccharide Deacetylase HfsH

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCGTFYIAGTFIDRHDGQQEMIS
AKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERNDSVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGI
MPGINRDSVDPHNLAAVELRADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT
VDAAARTLGL

Sequences:

>Translated_250_residues
MTQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCGTFYIAGTFIDRHDGQQEMIS
AKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERNDSVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGI
MPGINRDSVDPHNLAAVELRADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT
VDAAARTLGL
>Mature_249_residues
TQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCGTFYIAGTFIDRHDGQQEMISA
KGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERNDSVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGIM
PGINRDSVDPHNLAAVELRADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMTV
DAAARTLGL

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27805; Mature: 27674

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCG
CCCHHHHHHHHHCCCEEEECCCCEEEEECCCCEEEEEECCCCCHHHHCCCEEEECCCCEE
TFYIAGTFIDRHDGQQEMISAKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERND
EEEEEEEEEECCCCHHHHHHHCCHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCC
SVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGIMPGINRDSVDPHNLAAVELR
CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
ADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT
CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
VDAAARTLGL
ECHHHHHHCC
>Mature Secondary Structure 
TQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCG
CCHHHHHHHHHCCCEEEECCCCEEEEECCCCEEEEEECCCCCHHHHCCCEEEECCCCEE
TFYIAGTFIDRHDGQQEMISAKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERND
EEEEEEEEEECCCCHHHHHHHCCHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCC
SVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGIMPGINRDSVDPHNLAAVELR
CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
ADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT
CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
VDAAARTLGL
ECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA