Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887829
Identifier: 15887829
GI number: 15887829
Start: 471433
End: 472185
Strand: Direct
Name: 15887829
Synonym: Atu0482
Alternate gene names: NA
Gene position: 471433-472185 (Clockwise)
Preceding gene: 159184331
Following gene: 159184333
Centisome position: 16.59
GC content: 58.83
Gene sequence:
>753_bases ATGACGCAAAAAATCGGGACTTTTGTAGACCGGATCAACAACCGGCTGGTGCGGTATTTTCCGGGACCGGCGGTGCGGAT CGAAAAATCCGAACCGATCGTGTCCTTCACATTCGACGATGTACCGGCCACCGCCTGGACGAAGGGCGCGCGCATCCTGG AAAACGAGGGCGTTTGCGGAACGTTTTACATCGCCGGCACCTTTATCGACAGGCACGACGGACAGCAGGAGATGATTTCC GCCAAAGGCTGTTCGGAACTGGCAGCGGCCGGCCATGAGCTTGCCTGCCACACCTTTTCCCATCGCAAACTCTCGAGCTT TTCACGACGGGCGCTTGAAGAAGATCTCGAGCGCAATGACAGCGTTTTGGGTGCGTTCGACGAAAATCGGCACAGCCGAA ATTTCTCCGTTCCTTTCGGCATGGCCTCACCGGTCATGCAGCCCCTGCTGCGGCGCCGGTTCAGGACGACACGCGGCATC ATGCCCGGCATCAACCGGGACAGTGTCGACCCGCATAATCTTGCCGCAGTCGAGTTGCGTGCGGATCAGAGCTACCTCGA TGCGGCCGACCGCTGGCTTGAGGATGTTTTGCAAAAAGGCGGCTGGCTCATCATCTTCACCCATGATGTTTCACCGACAC CAAGCTTTTACGGCTGCCCGGAAGACAGATTTCAGGGCCTCGTCCGCAAGGCGGCGTCCGGCGGTGCGAAGATCATGACG GTCGATGCCGCGGCAAGGACACTCGGCCTGTAA
Upstream 100 bases:
>100_bases TTTGGTCTTCTCTGCTGATCGCGGTCTATTGTTTGAGGCATCAGGCGCACGACATACTTGAACAGGGGCAGTAATTTGCA GACAGGCCGGGGGGCTTTGT
Downstream 100 bases:
>100_bases AGAAATATTCTCAGCGCGTACTCGGGCGATATTGCGGAAACCTCTGTCCGCAATTGCGAACCTATTGGCTGGCCCAGATG ATGCGGGCAATCCACTCCAC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Polysaccharide Deacetylase Domain Protein; Oligosaccharide Deacetylase HfsH
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MTQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCGTFYIAGTFIDRHDGQQEMIS AKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERNDSVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGI MPGINRDSVDPHNLAAVELRADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT VDAAARTLGL
Sequences:
>Translated_250_residues MTQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCGTFYIAGTFIDRHDGQQEMIS AKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERNDSVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGI MPGINRDSVDPHNLAAVELRADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT VDAAARTLGL >Mature_249_residues TQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCGTFYIAGTFIDRHDGQQEMISA KGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERNDSVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGIM PGINRDSVDPHNLAAVELRADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMTV DAAARTLGL
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27805; Mature: 27674
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCG CCCHHHHHHHHHCCCEEEECCCCEEEEECCCCEEEEEECCCCCHHHHCCCEEEECCCCEE TFYIAGTFIDRHDGQQEMISAKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERND EEEEEEEEEECCCCHHHHHHHCCHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCC SVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGIMPGINRDSVDPHNLAAVELR CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE ADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE VDAAARTLGL ECHHHHHHCC >Mature Secondary Structure TQKIGTFVDRINNRLVRYFPGPAVRIEKSEPIVSFTFDDVPATAWTKGARILENEGVCG CCHHHHHHHHHCCCEEEECCCCEEEEECCCCEEEEEECCCCCHHHHCCCEEEECCCCEE TFYIAGTFIDRHDGQQEMISAKGCSELAAAGHELACHTFSHRKLSSFSRRALEEDLERND EEEEEEEEEECCCCHHHHHHHCCHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCC SVLGAFDENRHSRNFSVPFGMASPVMQPLLRRRFRTTRGIMPGINRDSVDPHNLAAVELR CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE ADQSYLDAADRWLEDVLQKGGWLIIFTHDVSPTPSFYGCPEDRFQGLVRKAASGGAKIMT CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE VDAAARTLGL ECHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA