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The map label for this gene is ugpB [C]

Identifier: 15887743

GI number: 15887743

Start: 386926

End: 388218

Strand: Direct

Name: ugpB [C]

Synonym: Atu0394

Alternate gene names: 15887743

Gene position: 386926-388218 (Clockwise)

Preceding gene: 15887742

Following gene: 159184289

Centisome position: 13.62

GC content: 59.71

Gene sequence:

>1293_bases
ATGAAACTCAACCGACGCGCCGTGATGGGCGGTCTGGCTCTTGGCATGGCTTTTGCTGGCCTCGCACAGCCGGTTCTGGC
CAACGAAATCACGCTCAACGTTCTTTACAACCTGCCGGGCTTCACGAAATTCCATCAGCCGCTGGCAGATGAATTCATGA
AGAAGAACCCTGACGTGAAGATCAACTTCCTCGCTCCGGCCGCCGGTTACAACGAAGGCCAGCAGCAGGTTCTGCGCTCT
GCCGTCACGGGCAATCTGCCGGACGTTTATTTCTCGGGCTACAATCTGACGGCGGAACTGGTCCACACGCTTGCACCGCG
CAACCAGATCACCGATCTCGGCCCGTTCATTCAGGCTGAAGGCGGTCAGGCCTTCCTCGACAAGAACTACAGCCCCAAGA
TGGCCGCACTCGGCCAGATCGATGGCAAGCAATACGGCCTGCCGGTCAATGCTTCTTCGCCGATCATCTACATCAACTCC
GACCTCGTCACCAAGGCTGGCGGCGACCCGGACAAGATGCCGACGACCTTCCCGGAGCTCATCGCTCTCGCCAAGAAGAT
CAAGGCTCTCGACCCGAAATTCGCTGGCATGAGCTACGATATCAACGGCTGGCCGGATGACTGGTTGTGGCAGGCGCTCG
TTGTCGAACAGGGCGGCAAGCTCGTCGACGACAAGACCAAGACCGTTGCCTTCGACAACGAGATCGGCCTCAACGCCCTG
AAGATGACCCGCCAGTTCGTTACCGAAGGTGGTCAGAACCTGCTCGACTGGGACCAGTCGCGCCAGCAGTTCGGCGCAGG
CCTCACCGGCTTCATCTTCTCGACGCCCGCTCACGTTCAGACGATCCAGGGTCTGGTTGGCGACCGCTTCAAGCTGAAGA
CGGCGACCTTCCCGCTCGATAACAAGGAAAAGGGCGGCGTGCCGACCGGCGGCAACTCTGCCGTCATCCTGACGCAGGAA
AAAGCCAAGCAGGATGCTGCGTGGAAATACCTGAAGTGGATCACCGGTCCAGAAGCGCAGAACACCATCGTTCGCATCAC
CGGCTACCTGCCGACCAACAAGCTGGCAACCGGCCCGGACTTCCTCGCTCCTTATTATGTCGAGAACCCGAATGTGAAGA
CCGCTTCGCTTCAGGCCGATCGTTCTCTGCCCTGGGCTGGTTATCCGGGCGGCGATTCCGTTCGCATCTGGCGCACGCAG
CGCGACATCATCGGCACCGTCATGCGCGGTGAAGTGACGCCGGAAGCCGGTCTCAAGCAGATCGTCGAGCAGACCAACGC
CCTGCTGAAATAA

Upstream 100 bases:

>100_bases
CTTCCTCCTCGCACGGCGGCACTTCATCGCCGGTATTACCATGACCGGCGTCAAGTGATGCCGTTCAGACTTCCTCCTCC
CAACCTTTCTGGAGACTGAC

Downstream 100 bases:

>100_bases
GCAGAACAAAAAAGAAGCTGCGGGGAAATCCGTTCCCGCAGCCATTTTGCGTAGGAAAATGATAATGAAGATCATCCAGA
TCACCGACACCCATCTTCTG

Product: ABC transporter, substrate binding protein (sugar)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MKLNRRAVMGGLALGMAFAGLAQPVLANEITLNVLYNLPGFTKFHQPLADEFMKKNPDVKINFLAPAAGYNEGQQQVLRS
AVTGNLPDVYFSGYNLTAELVHTLAPRNQITDLGPFIQAEGGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINS
DLVTKAGGDPDKMPTTFPELIALAKKIKALDPKFAGMSYDINGWPDDWLWQALVVEQGGKLVDDKTKTVAFDNEIGLNAL
KMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTPAHVQTIQGLVGDRFKLKTATFPLDNKEKGGVPTGGNSAVILTQE
KAKQDAAWKYLKWITGPEAQNTIVRITGYLPTNKLATGPDFLAPYYVENPNVKTASLQADRSLPWAGYPGGDSVRIWRTQ
RDIIGTVMRGEVTPEAGLKQIVEQTNALLK

Sequences:

>Translated_430_residues
MKLNRRAVMGGLALGMAFAGLAQPVLANEITLNVLYNLPGFTKFHQPLADEFMKKNPDVKINFLAPAAGYNEGQQQVLRS
AVTGNLPDVYFSGYNLTAELVHTLAPRNQITDLGPFIQAEGGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINS
DLVTKAGGDPDKMPTTFPELIALAKKIKALDPKFAGMSYDINGWPDDWLWQALVVEQGGKLVDDKTKTVAFDNEIGLNAL
KMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTPAHVQTIQGLVGDRFKLKTATFPLDNKEKGGVPTGGNSAVILTQE
KAKQDAAWKYLKWITGPEAQNTIVRITGYLPTNKLATGPDFLAPYYVENPNVKTASLQADRSLPWAGYPGGDSVRIWRTQ
RDIIGTVMRGEVTPEAGLKQIVEQTNALLK
>Mature_430_residues
MKLNRRAVMGGLALGMAFAGLAQPVLANEITLNVLYNLPGFTKFHQPLADEFMKKNPDVKINFLAPAAGYNEGQQQVLRS
AVTGNLPDVYFSGYNLTAELVHTLAPRNQITDLGPFIQAEGGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINS
DLVTKAGGDPDKMPTTFPELIALAKKIKALDPKFAGMSYDINGWPDDWLWQALVVEQGGKLVDDKTKTVAFDNEIGLNAL
KMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTPAHVQTIQGLVGDRFKLKTATFPLDNKEKGGVPTGGNSAVILTQE
KAKQDAAWKYLKWITGPEAQNTIVRITGYLPTNKLATGPDFLAPYYVENPNVKTASLQADRSLPWAGYPGGDSVRIWRTQ
RDIIGTVMRGEVTPEAGLKQIVEQTNALLK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=403, Percent_Identity=24.5657568238213, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46903; Mature: 46903

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNRRAVMGGLALGMAFAGLAQPVLANEITLNVLYNLPGFTKFHQPLADEFMKKNPDVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
INFLAPAAGYNEGQQQVLRSAVTGNLPDVYFSGYNLTAELVHTLAPRNQITDLGPFIQAE
EEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCEECC
GGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINSDLVTKAGGDPDKMPTTFPEL
CCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCHHHH
IALAKKIKALDPKFAGMSYDINGWPDDWLWQALVVEQGGKLVDDKTKTVAFDNEIGLNAL
HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCHHH
KMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTPAHVQTIQGLVGDRFKLKTATFPLD
HHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCC
NKEKGGVPTGGNSAVILTQEKAKQDAAWKYLKWITGPEAQNTIVRITGYLPTNKLATGPD
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC
FLAPYYVENPNVKTASLQADRSLPWAGYPGGDSVRIWRTQRDIIGTVMRGEVTPEAGLKQ
CCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHH
IVEQTNALLK
HHHHHHHHCC
>Mature Secondary Structure
MKLNRRAVMGGLALGMAFAGLAQPVLANEITLNVLYNLPGFTKFHQPLADEFMKKNPDVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
INFLAPAAGYNEGQQQVLRSAVTGNLPDVYFSGYNLTAELVHTLAPRNQITDLGPFIQAE
EEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCEECC
GGQAFLDKNYSPKMAALGQIDGKQYGLPVNASSPIIYINSDLVTKAGGDPDKMPTTFPEL
CCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCHHHH
IALAKKIKALDPKFAGMSYDINGWPDDWLWQALVVEQGGKLVDDKTKTVAFDNEIGLNAL
HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCHHH
KMTRQFVTEGGQNLLDWDQSRQQFGAGLTGFIFSTPAHVQTIQGLVGDRFKLKTATFPLD
HHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCC
NKEKGGVPTGGNSAVILTQEKAKQDAAWKYLKWITGPEAQNTIVRITGYLPTNKLATGPD
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC
FLAPYYVENPNVKTASLQADRSLPWAGYPGGDSVRIWRTQRDIIGTVMRGEVTPEAGLKQ
CCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHH
IVEQTNALLK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA