Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is trmB
Identifier: 15887714
GI number: 15887714
Start: 357787
End: 358485
Strand: Direct
Name: trmB
Synonym: Atu0363
Alternate gene names: 15887714
Gene position: 357787-358485 (Clockwise)
Preceding gene: 15887713
Following gene: 15887717
Centisome position: 12.59
GC content: 58.94
Gene sequence:
>699_bases ATGACGGAAGAACGGCGTTCGCGCGCAACGGAAGCGTTTTTTGGCAGACGCAAGGGCAAGCCCCTGCGCAATCAGCAGGT CGATACGATCGAGAACCTGCTGCCTCTGCTGAAAATCGATCTGGAAAGCGTGCCCCCGCAAAATCTGGTCGCTCTCTTTC CGGCGGATGTACGGTCGATCCGCCTGGAAATCGGTTTCGGCGGTGGCGAGCATCTCGCCCACCGCGCGGTCGAAAACCCC GAGACGGGCTTCATCGGCGTCGAGCCTTTCGTGAATTCCATGGCCAAACTGCTCGCGACGGTCCGCGAACGCGAACTGAT GAATATCCGCCTTTACGACGATGATGCGACGCAGCTGCTCGACTGGTTGCCCGAGGGGTCGATCGATCACATCGATCTGC TTTATCCCGACCCGTGGCCGAAGAAGAAGCACTGGAAGCGCCGCTTCGTTTCCGACGTCAATCTCGCCCGTTTCCATCGT GTGTTGAAACCCGGCGGCAAGTTCTGCTTTGCGTCGGATATAGATACTTACGTCAACTGGACGCTGCAGCATTGTGCCCG CCATGGCGGTTTTGAGTGGACGGCAACAAGCGCTGACGATTGGCGCACGCCCTATGCCAACTGGCCAGGCACGCGCTACG AGAACAAGGCGAAACGAGAAGGCCGCAGCTCGGCCTATCTCACCTTCATCCGTCGCTAA
Upstream 100 bases:
>100_bases TTGGCGGTGATTGAGAGATACCGTCTACAACTTTTGTAACCCGCACAGTGCCCCATGTGGCGCTGTGCGGGTTAAGTCTA TTTGTTGTTGAGAGTATGAG
Downstream 100 bases:
>100_bases AGCATTTCCGGTAAAACTGCGTAGCGGTTTTACGCCCGGAAAATGCGCCGGCAGCCTGATCCCTCAGAGCGCCGCATCCA CTTCCGCTGCCTGCGGAATG
Product: tRNA (guanine-N(7)-)-methyltransferase
Products: NA
Alternate protein names: tRNA(m7G46)-methyltransferase
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MTEERRSRATEAFFGRRKGKPLRNQQVDTIENLLPLLKIDLESVPPQNLVALFPADVRSIRLEIGFGGGEHLAHRAVENP ETGFIGVEPFVNSMAKLLATVRERELMNIRLYDDDATQLLDWLPEGSIDHIDLLYPDPWPKKKHWKRRFVSDVNLARFHR VLKPGGKFCFASDIDTYVNWTLQHCARHGGFEWTATSADDWRTPYANWPGTRYENKAKREGRSSAYLTFIRR
Sequences:
>Translated_232_residues MTEERRSRATEAFFGRRKGKPLRNQQVDTIENLLPLLKIDLESVPPQNLVALFPADVRSIRLEIGFGGGEHLAHRAVENP ETGFIGVEPFVNSMAKLLATVRERELMNIRLYDDDATQLLDWLPEGSIDHIDLLYPDPWPKKKHWKRRFVSDVNLARFHR VLKPGGKFCFASDIDTYVNWTLQHCARHGGFEWTATSADDWRTPYANWPGTRYENKAKREGRSSAYLTFIRR >Mature_231_residues TEERRSRATEAFFGRRKGKPLRNQQVDTIENLLPLLKIDLESVPPQNLVALFPADVRSIRLEIGFGGGEHLAHRAVENPE TGFIGVEPFVNSMAKLLATVRERELMNIRLYDDDATQLLDWLPEGSIDHIDLLYPDPWPKKKHWKRRFVSDVNLARFHRV LKPGGKFCFASDIDTYVNWTLQHCARHGGFEWTATSADDWRTPYANWPGTRYENKAKREGRSSAYLTFIRR
Specific function: Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG id: COG0220
COG function: function code R; Predicted S-adenosylmethionine-dependent methyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. TrmB family
Homologues:
Organism=Escherichia coli, GI1789330, Length=219, Percent_Identity=31.5068493150685, Blast_Score=96, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): TRMB_AGRT5 (Q8UID4)
Other databases:
- EMBL: AE007869 - PIR: AC2621 - PIR: C97403 - RefSeq: NP_353395.1 - ProteinModelPortal: Q8UID4 - SMR: Q8UID4 - STRING: Q8UID4 - GeneID: 1132401 - GenomeReviews: AE007869_GR - KEGG: atu:Atu0363 - eggNOG: COG0220 - HOGENOM: HBG322782 - OMA: RYGRKAE - PhylomeDB: Q8UID4 - ProtClustDB: PRK00121 - BioCyc: ATUM176299-1:ATU0363-MONOMER - HAMAP: MF_01057 - InterPro: IPR003358 - PANTHER: PTHR23417:SF1
Pfam domain/function: PF02390 Methyltransf_4
EC number: =2.1.1.33
Molecular weight: Translated: 26864; Mature: 26733
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: BINDING 63-63 BINDING 88-88 BINDING 115-115 BINDING 137-137 BINDING 141-141 BINDING 173-173
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEERRSRATEAFFGRRKGKPLRNQQVDTIENLLPLLKIDLESVPPQNLVALFPADVRSI CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE RLEIGFGGGEHLAHRAVENPETGFIGVEPFVNSMAKLLATVRERELMNIRLYDDDATQLL EEEEECCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHH DWLPEGSIDHIDLLYPDPWPKKKHWKRRFVSDVNLARFHRVLKPGGKFCFASDIDTYVNW HHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCHHHHHHH TLQHCARHGGFEWTATSADDWRTPYANWPGTRYENKAKREGRSSAYLTFIRR HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECC >Mature Secondary Structure TEERRSRATEAFFGRRKGKPLRNQQVDTIENLLPLLKIDLESVPPQNLVALFPADVRSI CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE RLEIGFGGGEHLAHRAVENPETGFIGVEPFVNSMAKLLATVRERELMNIRLYDDDATQLL EEEEECCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHH DWLPEGSIDHIDLLYPDPWPKKKHWKRRFVSDVNLARFHRVLKPGGKFCFASDIDTYVNW HHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCHHHHHHH TLQHCARHGGFEWTATSADDWRTPYANWPGTRYENKAKREGRSSAYLTFIRR HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194