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The map label for this gene is rlpA [C]

Identifier: 15887639

GI number: 15887639

Start: 284986

End: 285354

Strand: Reverse

Name: rlpA [C]

Synonym: Atu0290

Alternate gene names: 15887639

Gene position: 285354-284986 (Counterclockwise)

Preceding gene: 15887640

Following gene: 15887638

Centisome position: 10.04

GC content: 58.27

Gene sequence:

>369_bases
TTGTTGAATATCCGTCGTATAACTTTCACCGCTGCAACTATAGCCGCCTGTTCCATCATCGCGCCTCTTCAGGCGAATGC
GGCAAATGGTTGTGGAGGCGCATCGTGGTATGCGTTGTCCTCCAAGACTGCTTCGGGCGAGCGCATGAACGCCGCCAACC
TGACCGCCGCTCACCGCTCCCTGCGGTTCGGCACCAAGGTCAAGGTGACGAATGCCCGCAATGGCAAGGCCGTTGTAGTG
CGCATCAACGACCGCGGGCCGTTCATCAAGGGCCGCGTTCTCGATCTTTCCAAAGCTGCCGCCAAGAATATCGGCATGAT
CAGCTCCGGCACTGCCAAGGTCTGCTACGAGATCGTCAAGGCCGATTGA

Upstream 100 bases:

>100_bases
CGCCCTACAATCTCGCATCAAAAGGCGTTCAGGCCAGTTCATGGCCGTTTAGCAAGGGCACAATCAATCGGCGCGGGGCC
GATTTTCAGGGAAGTACAGT

Downstream 100 bases:

>100_bases
GCCTTGCCCTCGCCGCCATTCGCGTCTACCAACCGGGCTTATCAGCAAGAAGAGGTAGACAATGCGTTTGGGCGGGCGTT
TGGCCGGAGCAATCGAAGTA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MLNIRRITFTAATIAACSIIAPLQANAANGCGGASWYALSSKTASGERMNAANLTAAHRSLRFGTKVKVTNARNGKAVVV
RINDRGPFIKGRVLDLSKAAAKNIGMISSGTAKVCYEIVKAD

Sequences:

>Translated_122_residues
MLNIRRITFTAATIAACSIIAPLQANAANGCGGASWYALSSKTASGERMNAANLTAAHRSLRFGTKVKVTNARNGKAVVV
RINDRGPFIKGRVLDLSKAAAKNIGMISSGTAKVCYEIVKAD
>Mature_122_residues
MLNIRRITFTAATIAACSIIAPLQANAANGCGGASWYALSSKTASGERMNAANLTAAHRSLRFGTKVKVTNARNGKAVVV
RINDRGPFIKGRVLDLSKAAAKNIGMISSGTAKVCYEIVKAD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=83, Percent_Identity=42.1686746987952, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 12768; Mature: 12768

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIRRITFTAATIAACSIIAPLQANAANGCGGASWYALSSKTASGERMNAANLTAAHRS
CCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
LRFGTKVKVTNARNGKAVVVRINDRGPFIKGRVLDLSKAAAKNIGMISSGTAKVCYEIVK
CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECHHHHHHCCCCCCCCHHHHHHHHHC
AD
CC
>Mature Secondary Structure
MLNIRRITFTAATIAACSIIAPLQANAANGCGGASWYALSSKTASGERMNAANLTAAHRS
CCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
LRFGTKVKVTNARNGKAVVVRINDRGPFIKGRVLDLSKAAAKNIGMISSGTAKVCYEIVK
CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECHHHHHHCCCCCCCCHHHHHHHHHC
AD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]