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The map label for this gene is tspO [H]

Identifier: 15887633

GI number: 15887633

Start: 277897

End: 278349

Strand: Reverse

Name: tspO [H]

Synonym: Atu0284

Alternate gene names: 15887633

Gene position: 278349-277897 (Counterclockwise)

Preceding gene: 15887634

Following gene: 15887632

Centisome position: 9.8

GC content: 56.07

Gene sequence:

>453_bases
ATGAAGAACCTTGCCGTGTATATTATTTTTGTGGTTGTTGTTGTTGCCATCGGGGCGTTGATCGGCGTCAACAATGTGCC
GGGCGAATGGTATCAATCGCTGCAGAAACCATTCTTCAATCCCCCCAACTGGATTTTCGGGCCGGTCTGGACTGCGCTTT
ACGTGCTGATCGGCATCGCCGGCGCACGGACGTGGATACGGAAACCGATGGGGACGCGCATGCGCCTCTGGTTCACGCAG
ATGGTGCTGAATTTCCTGTGGTCGCCGATCTTTTTCGGCATGCAGAGCCCGGCCGGCGCGCTCGTCATCATCATCCCCAT
GCTGATCTGCATCATCGCCTTCATGGCACTGACCTACCGTCGCGACCGCATATCCATGTGGCTTTTCGCACCCTATGCCC
TATGGGTCGCCTTTGCCACGGTGCTCAACGCAAGTATCGGCATGCTGAACTAA

Upstream 100 bases:

>100_bases
TTCGCAGCGACGTGGCCTGGGACCAGCATATCGTACGCCTGTCCGGCTAAAATACTGAAAAGGCAGGGAACAAAAGCATG
GCCAGCGCATTTGAGGCGTC

Downstream 100 bases:

>100_bases
TTCGCCTTACGCCCTTGCCTTGCCCGACGCCACGCGCCATGTCAGTCTGCGACGGGGCAGAAGGCAGGCAGGTAGGCCAT
GGAGATTACGGATCCCGGCG

Product: tryptophan-rich sensory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKNLAVYIIFVVVVVAIGALIGVNNVPGEWYQSLQKPFFNPPNWIFGPVWTALYVLIGIAGARTWIRKPMGTRMRLWFTQ
MVLNFLWSPIFFGMQSPAGALVIIIPMLICIIAFMALTYRRDRISMWLFAPYALWVAFATVLNASIGMLN

Sequences:

>Translated_150_residues
MKNLAVYIIFVVVVVAIGALIGVNNVPGEWYQSLQKPFFNPPNWIFGPVWTALYVLIGIAGARTWIRKPMGTRMRLWFTQ
MVLNFLWSPIFFGMQSPAGALVIIIPMLICIIAFMALTYRRDRISMWLFAPYALWVAFATVLNASIGMLN
>Mature_150_residues
MKNLAVYIIFVVVVVAIGALIGVNNVPGEWYQSLQKPFFNPPNWIFGPVWTALYVLIGIAGARTWIRKPMGTRMRLWFTQ
MVLNFLWSPIFFGMQSPAGALVIIIPMLICIIAFMALTYRRDRISMWLFAPYALWVAFATVLNASIGMLN

Specific function: Unknown

COG id: COG3476

COG function: function code T; Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TspO/BZRP family [H]

Homologues:

Organism=Homo sapiens, GI74275350, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI19920472, Length=128, Percent_Identity=36.71875, Blast_Score=83, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004307 [H]

Pfam domain/function: PF03073 TspO_MBR [H]

EC number: NA

Molecular weight: Translated: 17033; Mature: 17033

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLAVYIIFVVVVVAIGALIGVNNVPGEWYQSLQKPFFNPPNWIFGPVWTALYVLIGIA
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GARTWIRKPMGTRMRLWFTQMVLNFLWSPIFFGMQSPAGALVIIIPMLICIIAFMALTYR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RDRISMWLFAPYALWVAFATVLNASIGMLN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNLAVYIIFVVVVVAIGALIGVNNVPGEWYQSLQKPFFNPPNWIFGPVWTALYVLIGIA
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GARTWIRKPMGTRMRLWFTQMVLNFLWSPIFFGMQSPAGALVIIIPMLICIIAFMALTYR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RDRISMWLFAPYALWVAFATVLNASIGMLN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2747617 [H]