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The map label for this gene is pecM [H]

Identifier: 15887623

GI number: 15887623

Start: 269293

End: 270156

Strand: Direct

Name: pecM [H]

Synonym: Atu0273

Alternate gene names: 15887623

Gene position: 269293-270156 (Clockwise)

Preceding gene: 159184239

Following gene: 159184242

Centisome position: 9.48

GC content: 61.69

Gene sequence:

>864_bases
ATGAAGAAAAATATGACCTATGCCGCCGATGTGCTGGTCACAGCACTTGCTCCCGCCATCTGGGGGACCACCTATTTCGT
CACGACGGAATTTTTGCCGCAGGGATATCCGTTGCATGTCGCCATGCTGCGCGCCTTGCCGGCCGGTATCCTGCTGCTGC
TTCTCGTCCGAAAGCTGCCACAGGGTATCTGGTGGCCGCGCAGCTTCATTCTCGGCGCGCTGAATTTCTCGTTTTTCTGG
GCAATGCTTTTCGTTTCGGCCTATCGGTTGCCCGGCGGTGTCGCCGCAACGGTGGGGGCGGTGCAACCACTCATCGTTAT
CGGTCTGTCGCGGCTGTTTCTCTCAACCCCGGTGCGGCCGCTCGCCATCGGCGCCGGTTTTCTCGGCATTGCCGGTGTTG
CGCTTCTGGTGCTAACGCCCGGCGCGGCACTAGATGGTATCGGTGTTGCCGCGGGTCTTGCCGGCGCCGTTTCCATGGCC
TTCGGAACGGTGCTGACCCGCAAATGGCGCCCGCCCGTCTCGAACCTCACCTTCACAGCTTGGCAATTGACGGCCGGTGG
CATTCTTCTTTTGCCGGTCGCTTATGCTCTGGAGCCGGCCCTGCCAGCGCCAACGGCGGTCAATGTGATGGGCATGGCCT
ATCTCGGCCTCATCGGTGCGGCGCTCACCTATCTTCTGTGGTTTCGTGGGCTCGCCCGCATCGAGCCTTCTGCGGCCGCA
TCGCTCGGTTTTTTAAGTCCTGTCGTGGCCACCCTGCTGGGCTGGCTGGCGCTTGGCCAAAGCCTTGCGCCAGCGCAGAT
TGCCGGGTTCATTGCCGTGCTTTTCAGCATCTGGCTCAGTCAGCGCAGCCAGTTACCGAGGTAG

Upstream 100 bases:

>100_bases
CCATGGGTTTCTTGCTCATCACCAAGGCATAACAATTGATATCTTGACGTCAAGATAAAATCGACTAAGCTGAATCTATC
TTGATATAGAGATTCTTGAG

Downstream 100 bases:

>100_bases
GGGGCCCGTCAGGCCCATTCGCCCTTGCGCATGACAGGAACCGTGGAGCCATCCGGCTTCACGCCATCGATATCCACCTT
GTTGGAGCCAATCATCCAGT

Product: regulator protein pecM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MKKNMTYAADVLVTALAPAIWGTTYFVTTEFLPQGYPLHVAMLRALPAGILLLLLVRKLPQGIWWPRSFILGALNFSFFW
AMLFVSAYRLPGGVAATVGAVQPLIVIGLSRLFLSTPVRPLAIGAGFLGIAGVALLVLTPGAALDGIGVAAGLAGAVSMA
FGTVLTRKWRPPVSNLTFTAWQLTAGGILLLPVAYALEPALPAPTAVNVMGMAYLGLIGAALTYLLWFRGLARIEPSAAA
SLGFLSPVVATLLGWLALGQSLAPAQIAGFIAVLFSIWLSQRSQLPR

Sequences:

>Translated_287_residues
MKKNMTYAADVLVTALAPAIWGTTYFVTTEFLPQGYPLHVAMLRALPAGILLLLLVRKLPQGIWWPRSFILGALNFSFFW
AMLFVSAYRLPGGVAATVGAVQPLIVIGLSRLFLSTPVRPLAIGAGFLGIAGVALLVLTPGAALDGIGVAAGLAGAVSMA
FGTVLTRKWRPPVSNLTFTAWQLTAGGILLLPVAYALEPALPAPTAVNVMGMAYLGLIGAALTYLLWFRGLARIEPSAAA
SLGFLSPVVATLLGWLALGQSLAPAQIAGFIAVLFSIWLSQRSQLPR
>Mature_287_residues
MKKNMTYAADVLVTALAPAIWGTTYFVTTEFLPQGYPLHVAMLRALPAGILLLLLVRKLPQGIWWPRSFILGALNFSFFW
AMLFVSAYRLPGGVAATVGAVQPLIVIGLSRLFLSTPVRPLAIGAGFLGIAGVALLVLTPGAALDGIGVAAGLAGAVSMA
FGTVLTRKWRPPVSNLTFTAWQLTAGGILLLPVAYALEPALPAPTAVNVMGMAYLGLIGAALTYLLWFRGLARIEPSAAA
SLGFLSPVVATLLGWLALGQSLAPAQIAGFIAVLFSIWLSQRSQLPR

Specific function: Involved in pectinase, cellulase, and blue pigment regulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 30165; Mature: 30165

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNMTYAADVLVTALAPAIWGTTYFVTTEFLPQGYPLHVAMLRALPAGILLLLLVRKLP
CCCCHHHHHHHHHHHHHHHHHCCHHEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
QGIWWPRSFILGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVIGLSRLFLSTPVRP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
LAIGAGFLGIAGVALLVLTPGAALDGIGVAAGLAGAVSMAFGTVLTRKWRPPVSNLTFTA
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
WQLTAGGILLLPVAYALEPALPAPTAVNVMGMAYLGLIGAALTYLLWFRGLARIEPSAAA
EECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SLGFLSPVVATLLGWLALGQSLAPAQIAGFIAVLFSIWLSQRSQLPR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKNMTYAADVLVTALAPAIWGTTYFVTTEFLPQGYPLHVAMLRALPAGILLLLLVRKLP
CCCCHHHHHHHHHHHHHHHHHCCHHEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
QGIWWPRSFILGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVIGLSRLFLSTPVRP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
LAIGAGFLGIAGVALLVLTPGAALDGIGVAAGLAGAVSMAFGTVLTRKWRPPVSNLTFTA
HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
WQLTAGGILLLPVAYALEPALPAPTAVNVMGMAYLGLIGAALTYLLWFRGLARIEPSAAA
EECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SLGFLSPVVATLLGWLALGQSLAPAQIAGFIAVLFSIWLSQRSQLPR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022282 [H]