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The map label for this gene is ybcM [C]

Identifier: 15887520

GI number: 15887520

Start: 171256

End: 172296

Strand: Reverse

Name: ybcM [C]

Synonym: Atu0167

Alternate gene names: 15887520

Gene position: 172296-171256 (Counterclockwise)

Preceding gene: 159184194

Following gene: 159184193

Centisome position: 6.06

GC content: 55.04

Gene sequence:

>1041_bases
ATGCCCGAAAAAAGGGTCAGTGACGAGATATCTGTGGTCGCCGGTCTGGCCGCTGGCGTCAGTAATTATGCCCGCTCACG
GGGCATCGATATCGTTCCCATTTGCAAGGCGCTGGATATTGATCCCGCCACATTCAGCAGCCTGACGGAACGCATCAGCC
TCGACAGATTTTCCCGTCTGCTCGAAACCTGCGCCTTGATTTCCGGCGATGACGCCTTCGGCCTGCAATGCGCCGCTACC
TTTCCAGCCGGTGCATCCGGCGCGTTCGGTTATGGGCTGATCAGCGCTCCCACGGTTCGGTCGTTCCTGCGTTTTCTTCA
GGACCATGTTTATTACGCCACCAACAACAGCAATTTTACCATGGTAGCGGATGCTACGCAGGTGACCCTCTCATGGTCCT
TCGCGCCTGGGATCGCCAAACGCGATCAATATGTAGATTTGTCACTTGCCGTTCTGGTTCAGCGGCTACGCGATATTCTC
GGAGAGCGCGTAAACCAGATCGAAATCGGTCTGGAGCGACAAAAACCCATTAATATTCAGCTATTTAAAGAGAGACTGAC
CAGACGGGTCAGTTTTTCCCAGGCCATCCACACGATGCGACTTCCGGCATCGCTTCTGGATGTGGCCAATCCGAATGCGG
ATGAGCGCCTGTTCGAATTGATGAACTTGCAATGCCGGATGTTGCGGCCTGAAACATCGGCGGACCCGACCCATTTCATC
GATCAGGTGAAACGCTACATGCAGATGCGGCTGTCGGACGCAGAACTTTCACTCGGAGAGATCGCGCCCTATTTCAACCT
GTCGGAACGGAGTTTCCAAAGGCGGCTCGCCGAGCTTGGCACAAATCTCAACGAGATAAAGGACGCCATTCGCAAAAATG
CCGGTTTCAAACTCCTTGTCGAAAGCGATCTTCCGGTATCCGACATCAGTTACAGGCTGGGTTACTCCACACCCGGCGCC
TTTTCGCGCTCCGTTTCGCGCTGGTTCGGGGCAACACCGACGGATATTCGCAGGAAACACGCGCATCATTCCGCCGGCTG
A

Upstream 100 bases:

>100_bases
CAGCCAACCTTAAAATGCCGCAGTCGGTCTGCTCGACAAACGCGCTTTCAAGGCTTACCATCAGGCGACAATTTCCAAAC
ATGGTACGCCAAGGCGAGGG

Downstream 100 bases:

>100_bases
CAGATATCACCGGCATCAATATTTCGAAAATACGCATAAAACTTGAGAAATATGTCGGCGTTTTTTGGAAGATGTGCCGA
AACGTAACAATAGAAATGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MPEKRVSDEISVVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRLLETCALISGDDAFGLQCAAT
FPAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFTMVADATQVTLSWSFAPGIAKRDQYVDLSLAVLVQRLRDIL
GERVNQIEIGLERQKPINIQLFKERLTRRVSFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFI
DQVKRYMQMRLSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLVESDLPVSDISYRLGYSTPGA
FSRSVSRWFGATPTDIRRKHAHHSAG

Sequences:

>Translated_346_residues
MPEKRVSDEISVVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRLLETCALISGDDAFGLQCAAT
FPAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFTMVADATQVTLSWSFAPGIAKRDQYVDLSLAVLVQRLRDIL
GERVNQIEIGLERQKPINIQLFKERLTRRVSFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFI
DQVKRYMQMRLSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLVESDLPVSDISYRLGYSTPGA
FSRSVSRWFGATPTDIRRKHAHHSAG
>Mature_345_residues
PEKRVSDEISVVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRLLETCALISGDDAFGLQCAATF
PAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFTMVADATQVTLSWSFAPGIAKRDQYVDLSLAVLVQRLRDILG
ERVNQIEIGLERQKPINIQLFKERLTRRVSFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFID
QVKRYMQMRLSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLVESDLPVSDISYRLGYSTPGAF
SRSVSRWFGATPTDIRRKHAHHSAG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38569; Mature: 38438

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKRVSDEISVVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHH
LETCALISGDDAFGLQCAATFPAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFT
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCEE
MVADATQVTLSWSFAPGIAKRDQYVDLSLAVLVQRLRDILGERVNQIEIGLERQKPINIQ
EEEECEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LFKERLTRRVSFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCHHEEECCCCCCCHHHHH
DQVKRYMQMRLSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLV
HHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEE
ESDLPVSDISYRLGYSTPGAFSRSVSRWFGATPTDIRRKHAHHSAG
ECCCCHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
PEKRVSDEISVVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHH
LETCALISGDDAFGLQCAATFPAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFT
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCEE
MVADATQVTLSWSFAPGIAKRDQYVDLSLAVLVQRLRDILGERVNQIEIGLERQKPINIQ
EEEECEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LFKERLTRRVSFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCHHEEECCCCCCCHHHHH
DQVKRYMQMRLSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLV
HHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEE
ESDLPVSDISYRLGYSTPGAFSRSVSRWFGATPTDIRRKHAHHSAG
ECCCCHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]