Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is cycM
Identifier: 15887455
GI number: 15887455
Start: 104797
End: 105375
Strand: Direct
Name: cycM
Synonym: Atu0101
Alternate gene names: 15887455
Gene position: 104797-105375 (Clockwise)
Preceding gene: 15887452
Following gene: 159184158
Centisome position: 3.69
GC content: 57.17
Gene sequence:
>579_bases ATGAATTCTTATGTTAATATGGGCGTTGGGGCGTTGCTGGGCACGGTTTTCGTCCTGATGTCGGTGTCGATTGCGTCTGA GGGCATTTTTCATGCGCCTGCGCCCGAAAAGGAAGGTTACACCATTGTTGCGGCAGAAAGCGGCGGTGGTGAAGCCGGTG GCGGAGAAGCCGCTGCAGCCGCGACGCCGATCGCAAAATTGCTTGCGAGCGCCGATGCCGCCAAGGGTGAAGCGGTCTTC AAGAAGTGTACGAGCTGTCATACCGGAGAGAGTGGTGGTGCAAACAAGGTCGGCCCCAATCTCTTCGATGTCGTCAACCG GCCGATCGCCAGCCACGAAGGTTTCAGCTACTCCGCTGGGATGAAGGATTTCTCCAAGGGTGCTTCCGTGCATTGGGATT ACGATCATCTCAACTACTTCCTCGAAGCCCCCAAGAAACACGTTCCCGGCACGGCCATGGGATTTGCGGGTGTGAAGAAG GAAACGGAAAGAGCCGACCTCATCGCTTATCTGCGCTCACTTTCGGCAAACCCGGCTCCGCTTCCGGATCCGAATGCGGC TCCCGCACCGATGAACTGA
Upstream 100 bases:
>100_bases GGACCATCATTCAAGTTGCGCAGGCTGTGCAAAAGCCATAGCTTTCGAGTAATTTCAAGATGCCCGGTTATATGGAGCGG ATGCGAGGGAGCGCATATAG
Downstream 100 bases:
>100_bases TGATCATGATGGTTCATGATAAAAGCCCGGTATCGCTGCCGGGCTTTTGTTTTTGGACGGGCGGATTGAAAATACGGCAA TGGCGCCTGAAAAATCAGAA
Product: cytochrome c
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAAATPIAKLLASADAAKGEAVF KKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKK ETERADLIAYLRSLSANPAPLPDPNAAPAPMN
Sequences:
>Translated_192_residues MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAAATPIAKLLASADAAKGEAVF KKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKK ETERADLIAYLRSLSANPAPLPDPNAAPAPMN >Mature_192_residues MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAAATPIAKLLASADAAKGEAVF KKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKK ETERADLIAYLRSLSANPAPLPDPNAAPAPMN
Specific function: May be involved in electron transfer from bc1 complex to aa3
COG id: COG3474
COG function: function code C; Cytochrome c2
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c family
Homologues:
Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=46.6019417475728, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17539604, Length=107, Percent_Identity=43.9252336448598, Blast_Score=81, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=43.5643564356436, Blast_Score=78, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6320796, Length=100, Percent_Identity=47, Blast_Score=96, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6322508, Length=107, Percent_Identity=42.9906542056075, Blast_Score=93, Evalue=2e-20, Organism=Drosophila melanogaster, GI17137228, Length=105, Percent_Identity=46.6666666666667, Blast_Score=100, Evalue=5e-22, Organism=Drosophila melanogaster, GI17137204, Length=107, Percent_Identity=46.7289719626168, Blast_Score=97, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): CYCM_AGRT5 (Q8UJ37)
Other databases:
- EMBL: AE007869 - PIR: AH2588 - PIR: H97370 - RefSeq: NP_353136.1 - ProteinModelPortal: Q8UJ37 - SMR: Q8UJ37 - STRING: Q8UJ37 - GeneID: 1132139 - GenomeReviews: AE007869_GR - KEGG: atu:Atu0101 - eggNOG: COG3474 - HOGENOM: HBG692582 - OMA: KETERAD - PhylomeDB: Q8UJ37 - ProtClustDB: CLSK557406 - BioCyc: ATUM176299-1:ATU0101-MONOMER - GO: GO:0006810 - InterPro: IPR002327 - InterPro: IPR009056 - InterPro: IPR003088 - Gene3D: G3DSA:1.10.760.10 - PANTHER: PTHR11961 - PRINTS: PR00604
Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c
EC number: NA
Molecular weight: Translated: 19697; Mature: 19697
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS51007 CYTC
Important sites: BINDING 83-83 BINDING 86-86
Signals:
None
Transmembrane regions:
HASH(0xb2fe404)-;
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCCCCCHHHH ATPIAKLLASADAAKGEAVFKKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAG HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC MKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSANPAP CHHHHCCCCEEECHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCC LPDPNAAPAPMN CCCCCCCCCCCH >Mature Secondary Structure MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCCCCCHHHH ATPIAKLLASADAAKGEAVFKKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAG HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC MKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSANPAP CHHHHCCCCEEECHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCC LPDPNAAPAPMN CCCCCCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194