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The map label for this gene is cycM

Identifier: 15887455

GI number: 15887455

Start: 104797

End: 105375

Strand: Direct

Name: cycM

Synonym: Atu0101

Alternate gene names: 15887455

Gene position: 104797-105375 (Clockwise)

Preceding gene: 15887452

Following gene: 159184158

Centisome position: 3.69

GC content: 57.17

Gene sequence:

>579_bases
ATGAATTCTTATGTTAATATGGGCGTTGGGGCGTTGCTGGGCACGGTTTTCGTCCTGATGTCGGTGTCGATTGCGTCTGA
GGGCATTTTTCATGCGCCTGCGCCCGAAAAGGAAGGTTACACCATTGTTGCGGCAGAAAGCGGCGGTGGTGAAGCCGGTG
GCGGAGAAGCCGCTGCAGCCGCGACGCCGATCGCAAAATTGCTTGCGAGCGCCGATGCCGCCAAGGGTGAAGCGGTCTTC
AAGAAGTGTACGAGCTGTCATACCGGAGAGAGTGGTGGTGCAAACAAGGTCGGCCCCAATCTCTTCGATGTCGTCAACCG
GCCGATCGCCAGCCACGAAGGTTTCAGCTACTCCGCTGGGATGAAGGATTTCTCCAAGGGTGCTTCCGTGCATTGGGATT
ACGATCATCTCAACTACTTCCTCGAAGCCCCCAAGAAACACGTTCCCGGCACGGCCATGGGATTTGCGGGTGTGAAGAAG
GAAACGGAAAGAGCCGACCTCATCGCTTATCTGCGCTCACTTTCGGCAAACCCGGCTCCGCTTCCGGATCCGAATGCGGC
TCCCGCACCGATGAACTGA

Upstream 100 bases:

>100_bases
GGACCATCATTCAAGTTGCGCAGGCTGTGCAAAAGCCATAGCTTTCGAGTAATTTCAAGATGCCCGGTTATATGGAGCGG
ATGCGAGGGAGCGCATATAG

Downstream 100 bases:

>100_bases
TGATCATGATGGTTCATGATAAAAGCCCGGTATCGCTGCCGGGCTTTTGTTTTTGGACGGGCGGATTGAAAATACGGCAA
TGGCGCCTGAAAAATCAGAA

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAAATPIAKLLASADAAKGEAVF
KKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKK
ETERADLIAYLRSLSANPAPLPDPNAAPAPMN

Sequences:

>Translated_192_residues
MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAAATPIAKLLASADAAKGEAVF
KKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKK
ETERADLIAYLRSLSANPAPLPDPNAAPAPMN
>Mature_192_residues
MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAAATPIAKLLASADAAKGEAVF
KKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKK
ETERADLIAYLRSLSANPAPLPDPNAAPAPMN

Specific function: May be involved in electron transfer from bc1 complex to aa3

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=46.6019417475728, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17539604, Length=107, Percent_Identity=43.9252336448598, Blast_Score=81, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=43.5643564356436, Blast_Score=78, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320796, Length=100, Percent_Identity=47, Blast_Score=96, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322508, Length=107, Percent_Identity=42.9906542056075, Blast_Score=93, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17137228, Length=105, Percent_Identity=46.6666666666667, Blast_Score=100, Evalue=5e-22,
Organism=Drosophila melanogaster, GI17137204, Length=107, Percent_Identity=46.7289719626168, Blast_Score=97, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYCM_AGRT5 (Q8UJ37)

Other databases:

- EMBL:   AE007869
- PIR:   AH2588
- PIR:   H97370
- RefSeq:   NP_353136.1
- ProteinModelPortal:   Q8UJ37
- SMR:   Q8UJ37
- STRING:   Q8UJ37
- GeneID:   1132139
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0101
- eggNOG:   COG3474
- HOGENOM:   HBG692582
- OMA:   KETERAD
- PhylomeDB:   Q8UJ37
- ProtClustDB:   CLSK557406
- BioCyc:   ATUM176299-1:ATU0101-MONOMER
- GO:   GO:0006810
- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088
- Gene3D:   G3DSA:1.10.760.10
- PANTHER:   PTHR11961
- PRINTS:   PR00604

Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 19697; Mature: 19697

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS51007 CYTC

Important sites: BINDING 83-83 BINDING 86-86

Signals:

None

Transmembrane regions:

HASH(0xb2fe404)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCCCCCHHHH
ATPIAKLLASADAAKGEAVFKKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
MKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSANPAP
CHHHHCCCCEEECHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
LPDPNAAPAPMN
CCCCCCCCCCCH
>Mature Secondary Structure
MNSYVNMGVGALLGTVFVLMSVSIASEGIFHAPAPEKEGYTIVAAESGGGEAGGGEAAAA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCCCCCHHHH
ATPIAKLLASADAAKGEAVFKKCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
MKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSANPAP
CHHHHCCCCEEECHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
LPDPNAAPAPMN
CCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194