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The map label for this gene is nudC [H]

Identifier: 15887452

GI number: 15887452

Start: 102038

End: 103000

Strand: Direct

Name: nudC [H]

Synonym: Atu0098

Alternate gene names: 15887452

Gene position: 102038-103000 (Clockwise)

Preceding gene: 159184155

Following gene: 15887455

Centisome position: 3.59

GC content: 59.61

Gene sequence:

>963_bases
ATGATGTCAATGAAAATTTTTGAAACCACTGCCCCCCATCCCGAAGCAAGCCTGCTGACGGCCTTTTCCAAAAATGCTCT
CGACCGTTTCGCTGAAAAGCGAACCGAGGAATGTGTTGCCGAGGCTCTGAAGGTTGACGGCACCCATATTTTTGCCTTTT
CGGGCAACCGGCTTGTTCTGAAACATGACGAGCAGGTCATCGATCCCCTGTTTTCCGCCTATGAGCTGGCCGAGTTGCAG
CCGGATTTCGACAATGCCGTGCTGCTGGGATATCGCGAAACCGGCGAACCGAGAATCGCGGTGCCGGTTGCCGTGGCCGA
AGACCAGCTGGCGAGCCACTACAAGCTGGCGGACGCCCGCACGCTTTATCGAGATCATCTTCTCGACGAGGAATTGCTGA
GCGAGGTCGCCCAGGCCGTCAGCCTCACCCACTGGAATGCCGATAACCGCTTCTGTGGCAGGTGCGGTGGGACCATGGAG
CAGCGGATTGGCGGCTACAAGCGCATCTGCGCCTCCTGTAGTCACACCATTTTTCCGCGCACCGATCCCGTTGTCATCAT
GATGACGATCGATATCGAGCGTGATCTCTGCCTGCTTGGTCGCGGCGCGCATTTTGCATCGGGCATGTATTCCTGCCTTG
CCGGTTTCGTGGAGCCGGGCGAGACGATAGAGCAGGCAGTGCGCCGTGAAACGCATGAGGAATCCGGGGTCGAAATCGGC
CGGGTGCGGTATCACGCCTCCCAGCCCTGGCCGATGCCGCACACGCTGATGATCGGCTGTTACGCCGAGGCTCTCTCGTC
CGATATTGCCCGCGACGAGATCGAGCTTGAGGATTGCCGGTGGTTCACCAGGGAAGAAGTAGCCAAGATGCTGGAGGCCC
CGGCGGGGGAAGGTTTTTCAGCCCCGCCGATCGGCGCCATCGCGCATCGGCTGATGCGCGACTGGGTGGAATGGCCCGAG
TGA

Upstream 100 bases:

>100_bases
ACACCTGCTGGCCCGGTCCTATCTGGGGGCACGGAACGGCGGTGCCTTATGCGGTGGGCGAGAAGGAAAGTTTGATGAAA
AAAATCTCCGGCGCGCTCTG

Downstream 100 bases:

>100_bases
GGGGTTGCGGCAGGCTCAGCTCTGGTTGAGCTTGCCGCGCATCGCATGGCCGTTGTAGACGCCGAGAATGCGGACTTTTT
CCGAGAAGAAGCGCAGCTCG

Product: mutT/nudix family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MMSMKIFETTAPHPEASLLTAFSKNALDRFAEKRTEECVAEALKVDGTHIFAFSGNRLVLKHDEQVIDPLFSAYELAELQ
PDFDNAVLLGYRETGEPRIAVPVAVAEDQLASHYKLADARTLYRDHLLDEELLSEVAQAVSLTHWNADNRFCGRCGGTME
QRIGGYKRICASCSHTIFPRTDPVVIMMTIDIERDLCLLGRGAHFASGMYSCLAGFVEPGETIEQAVRRETHEESGVEIG
RVRYHASQPWPMPHTLMIGCYAEALSSDIARDEIELEDCRWFTREEVAKMLEAPAGEGFSAPPIGAIAHRLMRDWVEWPE

Sequences:

>Translated_320_residues
MMSMKIFETTAPHPEASLLTAFSKNALDRFAEKRTEECVAEALKVDGTHIFAFSGNRLVLKHDEQVIDPLFSAYELAELQ
PDFDNAVLLGYRETGEPRIAVPVAVAEDQLASHYKLADARTLYRDHLLDEELLSEVAQAVSLTHWNADNRFCGRCGGTME
QRIGGYKRICASCSHTIFPRTDPVVIMMTIDIERDLCLLGRGAHFASGMYSCLAGFVEPGETIEQAVRRETHEESGVEIG
RVRYHASQPWPMPHTLMIGCYAEALSSDIARDEIELEDCRWFTREEVAKMLEAPAGEGFSAPPIGAIAHRLMRDWVEWPE
>Mature_320_residues
MMSMKIFETTAPHPEASLLTAFSKNALDRFAEKRTEECVAEALKVDGTHIFAFSGNRLVLKHDEQVIDPLFSAYELAELQ
PDFDNAVLLGYRETGEPRIAVPVAVAEDQLASHYKLADARTLYRDHLLDEELLSEVAQAVSLTHWNADNRFCGRCGGTME
QRIGGYKRICASCSHTIFPRTDPVVIMMTIDIERDLCLLGRGAHFASGMYSCLAGFVEPGETIEQAVRRETHEESGVEIG
RVRYHASQPWPMPHTLMIGCYAEALSSDIARDEIELEDCRWFTREEVAKMLEAPAGEGFSAPPIGAIAHRLMRDWVEWPE

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=197, Percent_Identity=49.746192893401, Blast_Score=201, Evalue=7e-52,
Organism=Homo sapiens, GI50593112, Length=332, Percent_Identity=31.3253012048193, Blast_Score=140, Evalue=2e-33,
Organism=Escherichia coli, GI48994995, Length=188, Percent_Identity=35.1063829787234, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71986510, Length=200, Percent_Identity=33, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI212645999, Length=200, Percent_Identity=33, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321371, Length=238, Percent_Identity=31.0924369747899, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 35889; Mature: 35889

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSMKIFETTAPHPEASLLTAFSKNALDRFAEKRTEECVAEALKVDGTHIFAFSGNRLVL
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEE
KHDEQVIDPLFSAYELAELQPDFDNAVLLGYRETGEPRIAVPVAVAEDQLASHYKLADAR
ECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHH
TLYRDHLLDEELLSEVAQAVSLTHWNADNRFCGRCGGTMEQRIGGYKRICASCSHTIFPR
HHHHHHCCCHHHHHHHHHHHHHHEECCCCCCHHHCCCCHHHHHCHHHHHHHHCCCCCCCC
TDPVVIMMTIDIERDLCLLGRGAHFASGMYSCLAGFVEPGETIEQAVRRETHEESGVEIG
CCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEE
RVRYHASQPWPMPHTLMIGCYAEALSSDIARDEIELEDCRWFTREEVAKMLEAPAGEGFS
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCCCC
APPIGAIAHRLMRDWVEWPE
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMSMKIFETTAPHPEASLLTAFSKNALDRFAEKRTEECVAEALKVDGTHIFAFSGNRLVL
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEE
KHDEQVIDPLFSAYELAELQPDFDNAVLLGYRETGEPRIAVPVAVAEDQLASHYKLADAR
ECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHH
TLYRDHLLDEELLSEVAQAVSLTHWNADNRFCGRCGGTMEQRIGGYKRICASCSHTIFPR
HHHHHHCCCHHHHHHHHHHHHHHEECCCCCCHHHCCCCHHHHHCHHHHHHHHCCCCCCCC
TDPVVIMMTIDIERDLCLLGRGAHFASGMYSCLAGFVEPGETIEQAVRRETHEESGVEIG
CCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEE
RVRYHASQPWPMPHTLMIGCYAEALSSDIARDEIELEDCRWFTREEVAKMLEAPAGEGFS
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCCCC
APPIGAIAHRLMRDWVEWPE
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA