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The map label for this gene is rbfA

Identifier: 15887440

GI number: 15887440

Start: 88258

End: 88674

Strand: Reverse

Name: rbfA

Synonym: Atu0086

Alternate gene names: 15887440

Gene position: 88674-88258 (Counterclockwise)

Preceding gene: 15887441

Following gene: 15887439

Centisome position: 3.12

GC content: 58.51

Gene sequence:

>417_bases
ATGGCAAAAGCTACATCATCGGCCCCTTCGCAACGCATGCTGCGTGTTGGCGAACAGGTGCGCGCCGCCCTGACACAAAT
TCTCCAGCGCGGCGAAGTTCGCGACGATCTGATCGAAGGCACCGTCATTTCCATCTCGGAAGTGCGCATGTCGCCCGATC
TCAAGATCGCAACCGCTTACGTGACGCCGCTTGGCGTTGCCGATCACACCGACATCATCAGCGCGCTGAACCGCCACGCA
AAATTCATGCGCGGCCGCCTCGGCCCGCAGCTTCGGCAGATGAAATACATGCCGGAACTGCGCTTCCGCGACGATACGAG
TTTCGACAATTACCAGAAGATCGACGCGCTCCTGCGCTCGCCCGAAGTTCAGCGCGATCTCGGTCCTTCAAACGAAAAAG
ACGACGAACAGAACTGA

Upstream 100 bases:

>100_bases
CGAACACATCACGAGAACGCTCTAAGCGTTCTCGCCGCAAAACAGGAATTTACTGTCGGGCGCCGGCTTACCGGCGCTCG
CTCCGTTTGAGGCATTACCC

Downstream 100 bases:

>100_bases
AGCATGTCCAAACCACGTAAACAGCAACACCGCAAACCCAAAGGCCGTCCGATTTCGGGCTGGCTCATCCTCGACAAGCC
GCTCGATTTCGGCTCCACAG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MAKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVTPLGVADHTDIISALNRHA
KFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEVQRDLGPSNEKDDEQN

Sequences:

>Translated_138_residues
MAKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVTPLGVADHTDIISALNRHA
KFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEVQRDLGPSNEKDDEQN
>Mature_137_residues
AKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVTPLGVADHTDIISALNRHAK
FMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEVQRDLGPSNEKDDEQN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_AGRT5 (Q8UJ52)

Other databases:

- EMBL:   AE007869
- PIR:   A97369
- PIR:   AI2586
- RefSeq:   NP_353121.1
- ProteinModelPortal:   Q8UJ52
- SMR:   Q8UJ52
- STRING:   Q8UJ52
- GeneID:   1132124
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0086
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   ATUM176299-1:ATU0086-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15599; Mature: 15468

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEE
VTPLGVADHTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
PEVQRDLGPSNEKDDEQN
CCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEE
VTPLGVADHTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
PEVQRDLGPSNEKDDEQN
CCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194