Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15887400
Identifier: 15887400
GI number: 15887400
Start: 43288
End: 43782
Strand: Reverse
Name: 15887400
Synonym: Atu8115
Alternate gene names: NA
Gene position: 43782-43288 (Counterclockwise)
Preceding gene: 159184137
Following gene: 159184136
Centisome position: 1.54
GC content: 57.17
Gene sequence:
>495_bases ATGACAAGCTATCTCGTTCTGGAAGCCCCCAACGGGCCGGACAGGGACCACAAGACGACCCGCTTCATTGCAGACCGTTT CGTCTGGCTGGCACTGATTGCGCCCTGGTTATGGCTTGCCGTCAACCGGCTGTGGCTGACGACGGCAGTTGTTGTCATTG CCACACTTGTGGCCGGGCAAATCTCAATGTTAGCCGGATTCGAACCCGTCGGCATTCTCCTTGGTTTCGCCATCGGGCTT ATCACGGCGCTGGAGGGGCGTGATTTTCTCGTCCGGCACCTGATCCGCAAAGGCTGGACGCTGACTTCGGTCATTTCCGC CCCTGATCTTTCAAGCGCGGAAGATATATATTTCTCCAGCCTCTCCGAAAACGCCGACAAGGCGGAACAGTTGTCCCGGC CGGTCTGGACCACTTCTGCGCAAAAGAGCGGTGGCAAAAACTTCGTCGACGATCCCGCCGGATCGTTTCTTTTCGACTTG AATGGAAGGCGCTGA
Upstream 100 bases:
>100_bases CGCGTTCTTCGCACGGCAACCGAGATCGACCCCCGGCAGGCAGGCCGCGTTCCCTCGACCAAGGGTATGCTGGCCTGACG CCAAAGCTGTCAGGAAGCCC
Downstream 100 bases:
>100_bases CATGCGTGTCGCGATTATCGACTACGGTTCGGGCAATTTGCGTTCGGCCACCAAAGCTTTCGAGCGTGCCGCCCGCGAGG CTGGCATCGACGCAACCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MTSYLVLEAPNGPDRDHKTTRFIADRFVWLALIAPWLWLAVNRLWLTTAVVVIATLVAGQISMLAGFEPVGILLGFAIGL ITALEGRDFLVRHLIRKGWTLTSVISAPDLSSAEDIYFSSLSENADKAEQLSRPVWTTSAQKSGGKNFVDDPAGSFLFDL NGRR
Sequences:
>Translated_164_residues MTSYLVLEAPNGPDRDHKTTRFIADRFVWLALIAPWLWLAVNRLWLTTAVVVIATLVAGQISMLAGFEPVGILLGFAIGL ITALEGRDFLVRHLIRKGWTLTSVISAPDLSSAEDIYFSSLSENADKAEQLSRPVWTTSAQKSGGKNFVDDPAGSFLFDL NGRR >Mature_163_residues TSYLVLEAPNGPDRDHKTTRFIADRFVWLALIAPWLWLAVNRLWLTTAVVVIATLVAGQISMLAGFEPVGILLGFAIGLI TALEGRDFLVRHLIRKGWTLTSVISAPDLSSAEDIYFSSLSENADKAEQLSRPVWTTSAQKSGGKNFVDDPAGSFLFDLN GRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18034; Mature: 17903
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSYLVLEAPNGPDRDHKTTRFIADRFVWLALIAPWLWLAVNRLWLTTAVVVIATLVAGQ CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISMLAGFEPVGILLGFAIGLITALEGRDFLVRHLIRKGWTLTSVISAPDLSSAEDIYFSS HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH LSENADKAEQLSRPVWTTSAQKSGGKNFVDDPAGSFLFDLNGRR HHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC >Mature Secondary Structure TSYLVLEAPNGPDRDHKTTRFIADRFVWLALIAPWLWLAVNRLWLTTAVVVIATLVAGQ CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISMLAGFEPVGILLGFAIGLITALEGRDFLVRHLIRKGWTLTSVISAPDLSSAEDIYFSS HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH LSENADKAEQLSRPVWTTSAQKSGGKNFVDDPAGSFLFDLNGRR HHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA