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The map label for this gene is ocd2 [H]

Identifier: 158423634

GI number: 158423634

Start: 2318538

End: 2319542

Strand: Direct

Name: ocd2 [H]

Synonym: AZC_2010

Alternate gene names: 158423634

Gene position: 2318538-2319542 (Clockwise)

Preceding gene: 158423632

Following gene: 158423642

Centisome position: 43.18

GC content: 69.05

Gene sequence:

>1005_bases
ATGTTATGGATTGCCCATGGGATGCCGTTCATGCCACGGCGGCGGGACAGGTGTGAGGAGCTGGACATGTTTCGCGTATT
TGATGCCGCGCAGATCCATGCGGCGCTGGAGTATCGGGCGCTGATCGAGGCCCTGCGCGCGGCCTTTGCCGAGGCGGCGA
CAGAGACGCCGGTGCGCCAGAGCTATGAGGTCGGCCTGCCGGGCGCCCCCGCCCACCTCCTGACCATGCCCGCATGGAGG
CGCGGCAATGTGCTGGGCGTGAAGCTGGTGAACGTGTTTCCCGGCAACTCGGCCCTCGGCCTCGGGGCGGTGAATGGCCT
CTATGTGCTGTTCGACGGCGCGACGGGCGTGCCGAAGGCCATCATGGACAGTGACGCATTGACCAACCGGCGCACCGCCG
CAGCCTCTGCGCTCGCCTCCGGCTTCCTCTCGCGGCCGGACAGCCGCACGCTGCTGGTGGTAGGCACAGGGCACCTTTCC
GCACATCTGGCCGCCGCCCACTGTGCCGTGCGGCCCATCTCGCGCGTGCTGGTCTGGGGCCGGTCGCCGGACAAGGCGGA
GAAGGCGGCCGCCAAGCTCACGGCACAGGGCCAGCCGGCCGAGCCCGTCACCGATCTTGCGGCAGCGACCGCCGAGGCGG
ACATCATCACCAGCGCCACCACCTCAACCGTGCCGCTGATCGCCGGCCGGAACGTGCGGCCGGGTACCCATGTGGACCTT
GTGGGCGCCTTCACCCCCGCCATGCGCGAGAGCGATGATGACCTGATCGCCGGCGCCAGCGTCTATGTGGACACGCGCGC
GGGTGCGCTCGCCGAGGCGGGTGACCTGTTGCAGCCCATCGCCGCCGGCGTGTTTGCGAAGGATCGGGTGAAGGGGGATC
TCTACGAATTGTGCGGCGGTCGGGCCGCCGGGCGCAGCTCGGACAGCGAGATCACCGTGTTCAAGTCCGTGGGCGCAGCC
ATCGAGGATCTGGTGGCGGCGCAGATGGTGTCTGGCCAAGGCTGA

Upstream 100 bases:

>100_bases
GAGAGACTACAAGGCGGCGGATGCCGGAAACAATCCCACGATGCCGATGGTGGACCGCGCGCCCCCAGATTGATGCCGGG
CGCGCGCACCGGCGCCCGAA

Downstream 100 bases:

>100_bases
CGCCATTGGATGAACGGCTGATCCGGCGGCGCGCCGGATCAGCCTGTCACGTTAATGCGATGCGGCCGTCAGCGGATTTT
CGGCATCCGGGCGGTCATTC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLWIAHGMPFMPRRRDRCEELDMFRVFDAAQIHAALEYRALIEALRAAFAEAATETPVRQSYEVGLPGAPAHLLTMPAWR
RGNVLGVKLVNVFPGNSALGLGAVNGLYVLFDGATGVPKAIMDSDALTNRRTAAASALASGFLSRPDSRTLLVVGTGHLS
AHLAAAHCAVRPISRVLVWGRSPDKAEKAAAKLTAQGQPAEPVTDLAAATAEADIITSATTSTVPLIAGRNVRPGTHVDL
VGAFTPAMRESDDDLIAGASVYVDTRAGALAEAGDLLQPIAAGVFAKDRVKGDLYELCGGRAAGRSSDSEITVFKSVGAA
IEDLVAAQMVSGQG

Sequences:

>Translated_334_residues
MLWIAHGMPFMPRRRDRCEELDMFRVFDAAQIHAALEYRALIEALRAAFAEAATETPVRQSYEVGLPGAPAHLLTMPAWR
RGNVLGVKLVNVFPGNSALGLGAVNGLYVLFDGATGVPKAIMDSDALTNRRTAAASALASGFLSRPDSRTLLVVGTGHLS
AHLAAAHCAVRPISRVLVWGRSPDKAEKAAAKLTAQGQPAEPVTDLAAATAEADIITSATTSTVPLIAGRNVRPGTHVDL
VGAFTPAMRESDDDLIAGASVYVDTRAGALAEAGDLLQPIAAGVFAKDRVKGDLYELCGGRAAGRSSDSEITVFKSVGAA
IEDLVAAQMVSGQG
>Mature_334_residues
MLWIAHGMPFMPRRRDRCEELDMFRVFDAAQIHAALEYRALIEALRAAFAEAATETPVRQSYEVGLPGAPAHLLTMPAWR
RGNVLGVKLVNVFPGNSALGLGAVNGLYVLFDGATGVPKAIMDSDALTNRRTAAASALASGFLSRPDSRTLLVVGTGHLS
AHLAAAHCAVRPISRVLVWGRSPDKAEKAAAKLTAQGQPAEPVTDLAAATAEADIITSATTSTVPLIAGRNVRPGTHVDL
VGAFTPAMRESDDDLIAGASVYVDTRAGALAEAGDLLQPIAAGVFAKDRVKGDLYELCGGRAAGRSSDSEITVFKSVGAA
IEDLVAAQMVSGQG

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=264, Percent_Identity=34.469696969697, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI62241008, Length=264, Percent_Identity=34.469696969697, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24642678, Length=293, Percent_Identity=30.0341296928328, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34848; Mature: 34848

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWIAHGMPFMPRRRDRCEELDMFRVFDAAQIHAALEYRALIEALRAAFAEAATETPVRQ
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SYEVGLPGAPAHLLTMPAWRRGNVLGVKLVNVFPGNSALGLGAVNGLYVLFDGATGVPKA
CEECCCCCCCHHHEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHH
IMDSDALTNRRTAAASALASGFLSRPDSRTLLVVGTGHLSAHLAAAHCAVRPISRVLVWG
HHCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHEEEC
RSPDKAEKAAAKLTAQGQPAEPVTDLAAATAEADIITSATTSTVPLIAGRNVRPGTHVDL
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHEECCCCCCEEEEECCCCCCCCCEEE
VGAFTPAMRESDDDLIAGASVYVDTRAGALAEAGDLLQPIAAGVFAKDRVKGDLYELCGG
EECCCHHHCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
RAAGRSSDSEITVFKSVGAAIEDLVAAQMVSGQG
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLWIAHGMPFMPRRRDRCEELDMFRVFDAAQIHAALEYRALIEALRAAFAEAATETPVRQ
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SYEVGLPGAPAHLLTMPAWRRGNVLGVKLVNVFPGNSALGLGAVNGLYVLFDGATGVPKA
CEECCCCCCCHHHEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHH
IMDSDALTNRRTAAASALASGFLSRPDSRTLLVVGTGHLSAHLAAAHCAVRPISRVLVWG
HHCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHEEEC
RSPDKAEKAAAKLTAQGQPAEPVTDLAAATAEADIITSATTSTVPLIAGRNVRPGTHVDL
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHEECCCCCCEEEEECCCCCCCCCEEE
VGAFTPAMRESDDDLIAGASVYVDTRAGALAEAGDLLQPIAAGVFAKDRVKGDLYELCGG
EECCCHHHCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
RAAGRSSDSEITVFKSVGAAIEDLVAAQMVSGQG
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3281832; 8045881; 11743193; 11743194 [H]