| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is rsh [H]
Identifier: 158423624
GI number: 158423624
Start: 2306034
End: 2308274
Strand: Direct
Name: rsh [H]
Synonym: AZC_2000
Alternate gene names: 158423624
Gene position: 2306034-2308274 (Clockwise)
Preceding gene: 158423623
Following gene: 158423625
Centisome position: 42.94
GC content: 66.85
Gene sequence:
>2241_bases GTGCTGCGACGGACCGTGCCGGCCATGATGCGCCAATACGAGCTGGTCGAGCGCGTTCGACGGTACAATCCCCAGACCGA CGAGGCGCTTCTCGACCGCGCCTATGTCTATGCCATGCGCGCCCACGGCGCGCAGGTGCGCGCGTCCGGCGACCCGTACT TCTCGCATCCGCTCGAAGTGGCCGCCATCCTCACCGACCTGAAGCTGGACGACGCCACCATCGTGGCGGCGCTGCTCCAC GACACGATCGAGGATACTGACGCCACCAAGGCGGAGATCGAACGCCTGTTCGGCAAGCAGATCGCCGATCTGGTGGAGGG GCTCACCAAGATCAAGAAGCTGGACCTCGTGTCCAAGCAGGCCAAGCAGGCGGAAAACCTGCGCAAGCTCCTGCTCGCCA TCGCCGACGATGTGCGCGTGCTGCTGGTCAAGCTCGCCGACCGCCTCCACAACATGCGCACGCTGAAATACGTGCCGCCG GAGAAGCGGGACCGCGTCGCGCAGGAAACCCTCGACATCTACGCGCCGCTCGCTGCCCGCATGGGCATGCACGACATGCG CGAGGAGCTGGAGGATCTCGCCTTCCGCCAGCTCATGCCGGAGGCCTATGAGAGCATCACGTCCCGCGTCGAGGAATTGC GGGAGCGCAACGGCCCGCTGGTGCAGGAGATCGAGCGCGAGCTTAAGGAGGAGCTGGAACGGCGCGGTATGAAGGCCGAG GTGAAAGGCCGCGAGAAGAAGCCGCACTCCATCTGGGGCAAGATGGAACGCAAGGCCATCGCCTTTGAGCAGCTTTCCGA CCTCTACGGCTTCCGCGTCATCGTGGACGGGGTGGAAGACTGCTACCGCACGCTGGGCATCGTCCACACCAAGTGGCCGC TCGTGCCGGGCCGCTTCAAGGACTACATCTCGACCCCGAAGCCGAACGACTATCGTTCGCTGCACACAACGGTCATCGGC CCGCGCCGCCAGCGCGTGGAGCTTCAGGTCCGCACCCGCGACATGGACGAGATCGCCGAATACGGCATCGCGGCCCATGC GCTCTACAAGGATGCCAGCGGCGCGCCGGGGGCCATGCTCTCCACCGAGAGCAGCGCCTATGCCTGGCTGCGCAAGACCA TCGAGAACCTGTCGCAGGGCCTGTCGCCGGAGGAGTTCCTGGAGCACACGAAGCTCGAGCTCTTCCACGATCAGGTCTTC TGCTTCACCCCCAAGGGCCGGCTCATTGCCCTGCCGCGCAAGGCGACGCCCATCGATTTCGCCTATGCGGTCCACACCGA CGTCGGCAATACGGCGGTGGGCTGCAAGATCAACGGCAACATCGCCCCGCTGGTCTCCGAGCTGAAGAATGGCGACGAGG TGGAGATCATCACCTCCAAGGCCCAGACGCCCCCCGGAGCTTGGGAGACCATCGCCGTTACCGGCAAGGCGCGCGCCGCC GTGCGCCGCGCCACGCGGGCGGCGGTGCGGGCGCAATATGCGGGCCTCGGCCGCAAGATCGCCGAGCGGGCCTTCGCCCG CGCCGGCAAGGCCTTCTCCGACGAGGTGGTGACCAAGGGCATGTCGCGCCTTGCCCGCACGGCGGTGGAGGACGTGTTCG CGGCGGTCGGGCGCGGCGAGATCAAAACCGACGATCTCATCCGCGCCGTCTATCCGGACTGGACCGCCCCGCGCCCCGAG GACCGGCTCGCCGCCAACCGCGCTCCGCAGGGCGAGGGCTGGTTCGAGCTCAAGAAGGGGCACAACCTCAAGTTCAAGAT CCCCGAAGGCGGCGAAGAGGCCTTCGTGGCTGCCTTGCCCATCCGGGGCATCAATTCCGATTTGCCCGTGCGCTTCTCGC CGCAGGGGGGCGCGGTGCCGGGCGACCGCATCGTCGGCATCCTCACCCCGGGCGAGGGCATTACCATCTATCCCATCCAG TCGAAGGCGCTCCAGCACTTCGAGGACGCGCCCGAGCGCTGGCTCGACGTGCGCTGGGACGTGGATGAGCTGAGCACAGG CCGCTTCCCCGCGCGCATTCGTGTGACCGCCATCAACGAGCCGGGCACGCTGGGGCAGGTGGCGACCATCATCGGCGAGC GCAACGGCAATATCGAGGGACTGGAGATGCGCTCGCGCTCGCCAGACTTCACCGAGATGCTGATCGATCTCGACGTGTTC GACCTCCGGCACCTGAACGGCATCCTCACCGATCTGCGCGGACGCCCCGTTGTGTCGAGCGCCGAGCGCGTCAATGGGTG A
Upstream 100 bases:
>100_bases GAGGCATTCGCAAAAAAGTCATCTGCGACTTGCGCCAAGGTGGCGCCTGCATGATATGAGCCGGGCTTGACTAATCACGG CGGCCCGCCCGGGTCCGCCC
Downstream 100 bases:
>100_bases CGGCCCGGCCCCGAGGCCTTAAATCCTCCGGCCGGTGTTCTCCGGCATCATCCTTCAGGAGCTGACACGATGACCGCCCC CATCCGGCTCGGATTGAACG
Product: RelA/SpoT protein
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]
Number of amino acids: Translated: 746; Mature: 746
Protein sequence:
>746_residues MLRRTVPAMMRQYELVERVRRYNPQTDEALLDRAYVYAMRAHGAQVRASGDPYFSHPLEVAAILTDLKLDDATIVAALLH DTIEDTDATKAEIERLFGKQIADLVEGLTKIKKLDLVSKQAKQAENLRKLLLAIADDVRVLLVKLADRLHNMRTLKYVPP EKRDRVAQETLDIYAPLAARMGMHDMREELEDLAFRQLMPEAYESITSRVEELRERNGPLVQEIERELKEELERRGMKAE VKGREKKPHSIWGKMERKAIAFEQLSDLYGFRVIVDGVEDCYRTLGIVHTKWPLVPGRFKDYISTPKPNDYRSLHTTVIG PRRQRVELQVRTRDMDEIAEYGIAAHALYKDASGAPGAMLSTESSAYAWLRKTIENLSQGLSPEEFLEHTKLELFHDQVF CFTPKGRLIALPRKATPIDFAYAVHTDVGNTAVGCKINGNIAPLVSELKNGDEVEIITSKAQTPPGAWETIAVTGKARAA VRRATRAAVRAQYAGLGRKIAERAFARAGKAFSDEVVTKGMSRLARTAVEDVFAAVGRGEIKTDDLIRAVYPDWTAPRPE DRLAANRAPQGEGWFELKKGHNLKFKIPEGGEEAFVAALPIRGINSDLPVRFSPQGGAVPGDRIVGILTPGEGITIYPIQ SKALQHFEDAPERWLDVRWDVDELSTGRFPARIRVTAINEPGTLGQVATIIGERNGNIEGLEMRSRSPDFTEMLIDLDVF DLRHLNGILTDLRGRPVVSSAERVNG
Sequences:
>Translated_746_residues MLRRTVPAMMRQYELVERVRRYNPQTDEALLDRAYVYAMRAHGAQVRASGDPYFSHPLEVAAILTDLKLDDATIVAALLH DTIEDTDATKAEIERLFGKQIADLVEGLTKIKKLDLVSKQAKQAENLRKLLLAIADDVRVLLVKLADRLHNMRTLKYVPP EKRDRVAQETLDIYAPLAARMGMHDMREELEDLAFRQLMPEAYESITSRVEELRERNGPLVQEIERELKEELERRGMKAE VKGREKKPHSIWGKMERKAIAFEQLSDLYGFRVIVDGVEDCYRTLGIVHTKWPLVPGRFKDYISTPKPNDYRSLHTTVIG PRRQRVELQVRTRDMDEIAEYGIAAHALYKDASGAPGAMLSTESSAYAWLRKTIENLSQGLSPEEFLEHTKLELFHDQVF CFTPKGRLIALPRKATPIDFAYAVHTDVGNTAVGCKINGNIAPLVSELKNGDEVEIITSKAQTPPGAWETIAVTGKARAA VRRATRAAVRAQYAGLGRKIAERAFARAGKAFSDEVVTKGMSRLARTAVEDVFAAVGRGEIKTDDLIRAVYPDWTAPRPE DRLAANRAPQGEGWFELKKGHNLKFKIPEGGEEAFVAALPIRGINSDLPVRFSPQGGAVPGDRIVGILTPGEGITIYPIQ SKALQHFEDAPERWLDVRWDVDELSTGRFPARIRVTAINEPGTLGQVATIIGERNGNIEGLEMRSRSPDFTEMLIDLDVF DLRHLNGILTDLRGRPVVSSAERVNG >Mature_746_residues MLRRTVPAMMRQYELVERVRRYNPQTDEALLDRAYVYAMRAHGAQVRASGDPYFSHPLEVAAILTDLKLDDATIVAALLH DTIEDTDATKAEIERLFGKQIADLVEGLTKIKKLDLVSKQAKQAENLRKLLLAIADDVRVLLVKLADRLHNMRTLKYVPP EKRDRVAQETLDIYAPLAARMGMHDMREELEDLAFRQLMPEAYESITSRVEELRERNGPLVQEIERELKEELERRGMKAE VKGREKKPHSIWGKMERKAIAFEQLSDLYGFRVIVDGVEDCYRTLGIVHTKWPLVPGRFKDYISTPKPNDYRSLHTTVIG PRRQRVELQVRTRDMDEIAEYGIAAHALYKDASGAPGAMLSTESSAYAWLRKTIENLSQGLSPEEFLEHTKLELFHDQVF CFTPKGRLIALPRKATPIDFAYAVHTDVGNTAVGCKINGNIAPLVSELKNGDEVEIITSKAQTPPGAWETIAVTGKARAA VRRATRAAVRAQYAGLGRKIAERAFARAGKAFSDEVVTKGMSRLARTAVEDVFAAVGRGEIKTDDLIRAVYPDWTAPRPE DRLAANRAPQGEGWFELKKGHNLKFKIPEGGEEAFVAALPIRGINSDLPVRFSPQGGAVPGDRIVGILTPGEGITIYPIQ SKALQHFEDAPERWLDVRWDVDELSTGRFPARIRVTAINEPGTLGQVATIIGERNGNIEGLEMRSRSPDFTEMLIDLDVF DLRHLNGILTDLRGRPVVSSAERVNG
Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38348360, Length=140, Percent_Identity=40.7142857142857, Blast_Score=77, Evalue=7e-14, Organism=Escherichia coli, GI1790082, Length=732, Percent_Identity=36.8852459016393, Blast_Score=487, Evalue=1e-138, Organism=Escherichia coli, GI1789147, Length=701, Percent_Identity=32.2396576319544, Blast_Score=369, Evalue=1e-103, Organism=Caenorhabditis elegans, GI25143118, Length=145, Percent_Identity=35.1724137931034, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI24650996, Length=138, Percent_Identity=36.231884057971, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83539; Mature: 83539
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRTVPAMMRQYELVERVRRYNPQTDEALLDRAYVYAMRAHGAQVRASGDPYFSHPLEV CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHH AAILTDLKLDDATIVAALLHDTIEDTDATKAEIERLFGKQIADLVEGLTKIKKLDLVSKQ HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKQAENLRKLLLAIADDVRVLLVKLADRLHNMRTLKYVPPEKRDRVAQETLDIYAPLAAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHH MGMHDMREELEDLAFRQLMPEAYESITSRVEELRERNGPLVQEIERELKEELERRGMKAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE VKGREKKPHSIWGKMERKAIAFEQLSDLYGFRVIVDGVEDCYRTLGIVHTKWPLVPGRFK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHH DYISTPKPNDYRSLHTTVIGPRRQRVELQVRTRDMDEIAEYGIAAHALYKDASGAPGAML HHCCCCCCCCCHHHHHHEECCCCCEEEEEEECCCHHHHHHHCHHHHHHHCCCCCCCCCEE STESSAYAWLRKTIENLSQGLSPEEFLEHTKLELFHDQVFCFTPKGRLIALPRKATPIDF CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCEE AYAVHTDVGNTAVGCKINGNIAPLVSELKNGDEVEIITSKAQTPPGAWETIAVTGKARAA EEEEECCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCHHHHH VRRATRAAVRAQYAGLGRKIAERAFARAGKAFSDEVVTKGMSRLARTAVEDVFAAVGRGE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IKTDDLIRAVYPDWTAPRPEDRLAANRAPQGEGWFELKKGHNLKFKIPEGGEEAFVAALP CCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCEEEECCCCCCCEEEEEEE IRGINSDLPVRFSPQGGAVPGDRIVGILTPGEGITIYPIQSKALQHFEDAPERWLDVRWD CCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHCHHHHEECEEC VDELSTGRFPARIRVTAINEPGTLGQVATIIGERNGNIEGLEMRSRSPDFTEMLIDLDVF HHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHH DLRHLNGILTDLRGRPVVSSAERVNG HHHHHHHHHHHCCCCCCCCCHHHCCC >Mature Secondary Structure MLRRTVPAMMRQYELVERVRRYNPQTDEALLDRAYVYAMRAHGAQVRASGDPYFSHPLEV CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHH AAILTDLKLDDATIVAALLHDTIEDTDATKAEIERLFGKQIADLVEGLTKIKKLDLVSKQ HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKQAENLRKLLLAIADDVRVLLVKLADRLHNMRTLKYVPPEKRDRVAQETLDIYAPLAAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHH MGMHDMREELEDLAFRQLMPEAYESITSRVEELRERNGPLVQEIERELKEELERRGMKAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE VKGREKKPHSIWGKMERKAIAFEQLSDLYGFRVIVDGVEDCYRTLGIVHTKWPLVPGRFK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHH DYISTPKPNDYRSLHTTVIGPRRQRVELQVRTRDMDEIAEYGIAAHALYKDASGAPGAML HHCCCCCCCCCHHHHHHEECCCCCEEEEEEECCCHHHHHHHCHHHHHHHCCCCCCCCCEE STESSAYAWLRKTIENLSQGLSPEEFLEHTKLELFHDQVFCFTPKGRLIALPRKATPIDF CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCEE AYAVHTDVGNTAVGCKINGNIAPLVSELKNGDEVEIITSKAQTPPGAWETIAVTGKARAA EEEEECCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCHHHHH VRRATRAAVRAQYAGLGRKIAERAFARAGKAFSDEVVTKGMSRLARTAVEDVFAAVGRGE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IKTDDLIRAVYPDWTAPRPEDRLAANRAPQGEGWFELKKGHNLKFKIPEGGEEAFVAALP CCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCEEEECCCCCCCEEEEEEE IRGINSDLPVRFSPQGGAVPGDRIVGILTPGEGITIYPIQSKALQHFEDAPERWLDVRWD CCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHCHHHHEECEEC VDELSTGRFPARIRVTAINEPGTLGQVATIIGERNGNIEGLEMRSRSPDFTEMLIDLDVF HHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHH DLRHLNGILTDLRGRPVVSSAERVNG HHHHHHHHHHHCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA