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The map label for this gene is tctD [H]

Identifier: 158423564

GI number: 158423564

Start: 2240577

End: 2241245

Strand: Direct

Name: tctD [H]

Synonym: AZC_1940

Alternate gene names: 158423564

Gene position: 2240577-2241245 (Clockwise)

Preceding gene: 158423561

Following gene: 158423565

Centisome position: 41.73

GC content: 65.32

Gene sequence:

>669_bases
ATGCGGCTCCTTCTTGTCGAAGATAATCTTGAACTCGCCGAGTGGCTGGCGAAGATCCTGCGGCGGGACAATTTCGTCGT
GGACGTGCTGCATGACGGCGAGGCGGCCGATCACGCGCTGAGCCTCGAAACCTATGATCTCGTCATCCTCGATTTGACCT
TGCCCGGCATGAGCGGCCTCCATCTGCTGCGTCGCCTGCGCGGGCGCAACGACGCCGTGCCGGTTATCATCCTCACCGCC
AATGCCAGCCTCGACGGGCGCGTCGCCGGGCTCGACGAGGGCGCGGACGACTATCTGGCGAAGCCTTTCGACATGGCGGA
GCTTGAGGCCCGTATCCGGGTGCAACTGCGCCGCTCTGCCCGGCGGGCCGATCCGATCATAACCTGCGGTGGGCTGGCCT
TCGACACCAAGACCCGCCAGTTCCGCCTGGGGGAGGCGCCGCTCAGCCTCACACCGCGCGAGCATGCGGTGCTGGAGGCG
CTGCTGGTGAAGACCGGCCAGACGGTGAGCAAGGCGCAGCTGTCCCAGACCATCTTCGGCCTCGATGATCTCGCCGATCC
CAGCGCCATCGAAATCTATGTGCACCGGCTGCGCCGCAAGCTGGAGGGCAGTGACGTCTCCATCGTCACCTTGCGTGGCC
TCGGCTACCTGCTGCGCCATGCGCATTAA

Upstream 100 bases:

>100_bases
GACGTGTGTGTTCGTGGCCGGGTGGGTCTCGCGCCGGTCGCCTTCGTTGCCAGCGGATCGCCGGGTGCTCTAGAGTGCCG
CAGCTTCAGGCTGGCGTGAG

Downstream 100 bases:

>100_bases
GAGCCTGCGCCTCCAGCTTCTGTGCTGGCTCCTGCTGCCGCTCGCGGGGCTCATGGCGCTCAATGTCTGGACGAGCTTCC
GGCAGGCGCGGAGCACCGCC

Product: response regulator receiver

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRLLLVEDNLELAEWLAKILRRDNFVVDVLHDGEAADHALSLETYDLVILDLTLPGMSGLHLLRRLRGRNDAVPVIILTA
NASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRRSARRADPIITCGGLAFDTKTRQFRLGEAPLSLTPREHAVLEA
LLVKTGQTVSKAQLSQTIFGLDDLADPSAIEIYVHRLRRKLEGSDVSIVTLRGLGYLLRHAH

Sequences:

>Translated_222_residues
MRLLLVEDNLELAEWLAKILRRDNFVVDVLHDGEAADHALSLETYDLVILDLTLPGMSGLHLLRRLRGRNDAVPVIILTA
NASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRRSARRADPIITCGGLAFDTKTRQFRLGEAPLSLTPREHAVLEA
LLVKTGQTVSKAQLSQTIFGLDDLADPSAIEIYVHRLRRKLEGSDVSIVTLRGLGYLLRHAH
>Mature_222_residues
MRLLLVEDNLELAEWLAKILRRDNFVVDVLHDGEAADHALSLETYDLVILDLTLPGMSGLHLLRRLRGRNDAVPVIILTA
NASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRRSARRADPIITCGGLAFDTKTRQFRLGEAPLSLTPREHAVLEA
LLVKTGQTVSKAQLSQTIFGLDDLADPSAIEIYVHRLRRKLEGSDVSIVTLRGLGYLLRHAH

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=38.5321100917431, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=40.8256880733945, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=35.3211009174312, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=36.9369369369369, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=34.8017621145374, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=33.1818181818182, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=33.6363636363636, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=37.5, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=35.2678571428571, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=36.4035087719298, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=29.0178571428571, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=28.7610619469027, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790299, Length=146, Percent_Identity=30.8219178082192, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=25.974025974026, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790437, Length=160, Percent_Identity=30.625, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788713, Length=97, Percent_Identity=39.1752577319588, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24629; Mature: 24629

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDNLELAEWLAKILRRDNFVVDVLHDGEAADHALSLETYDLVILDLTLPGMSGL
CEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCHHEEEEEEEEEEEEEEECCCCHHH
HLLRRLRGRNDAVPVIILTANASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRRSA
HHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
RRADPIITCGGLAFDTKTRQFRLGEAPLSLTPREHAVLEALLVKTGQTVSKAQLSQTIFG
HHCCCEEEECCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
LDDLADPSAIEIYVHRLRRKLEGSDVSIVTLRGLGYLLRHAH
CHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCC
>Mature Secondary Structure
MRLLLVEDNLELAEWLAKILRRDNFVVDVLHDGEAADHALSLETYDLVILDLTLPGMSGL
CEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCHHEEEEEEEEEEEEEEECCCCHHH
HLLRRLRGRNDAVPVIILTANASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRRSA
HHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
RRADPIITCGGLAFDTKTRQFRLGEAPLSLTPREHAVLEALLVKTGQTVSKAQLSQTIFG
HHCCCEEEECCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
LDDLADPSAIEIYVHRLRRKLEGSDVSIVTLRGLGYLLRHAH
CHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]