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The map label for this gene is nusB

Identifier: 15834839

GI number: 15834839

Start: 260306

End: 260800

Strand: Reverse

Name: nusB

Synonym: TC0219

Alternate gene names: 15834839

Gene position: 260800-260306 (Counterclockwise)

Preceding gene: 15834840

Following gene: 15834838

Centisome position: 24.31

GC content: 44.04

Gene sequence:

>495_bases
GTGATCATGTCAGTAATGGCTTCTGACAGTGCTCGTGCTGTGGTGTGTACTAGCCGGCCTTTCCCAAAGCAAAAATTGCG
TGAACTTGTTTTACAGGCATTGTACGCCCTGGAAATGGCCCCTAAGGGAGAGGACTCTCTTGTTAGTCTGCTGATGACAG
AAGCCTCTGTTTCAAAAAAAAATGTACTATACGCCTTAATGTTTTGCAAAGCAATTCGGGCCAACCAGTCAGAGCTGGAT
GCTCTGCTTAATGCGACAATTCGCACAACCACTCTTGCTAATCTGACAATTATCGAGCGCAATATTTTACGCATGATGCT
TTTTGAACATCAGCAGAATCAAGAAAGCTCCCCTATCCCAACAGCAGTTCTTATAGCGGAAACAACTCGCCTCATTAAAA
AATTTAGTTATGTGGAAGGAAGTTCGCTAATCCTTGCCGTTTTAGGTTCCATTTTTGACCAGGTAGCTCAAGAGCCCGCT
TCTATGTGTGGTTAA

Upstream 100 bases:

>100_bases
ATATACTCAGTGCCTTCCTTCCATTTCGGCGCCCTAAGAAAGGAGGAAAGGCTGAGCCTTCATGTTATAGGGTGCATAGC
GTTGTATTCTTTTTTTAGGT

Downstream 100 bases:

>100_bases
CCGTATATAATTTTTATCTTTAGCATTACCCCTTATCAAATTAAGATGACAGAGCATAAGGAAATACCGTTATGTATGGT
GTTTCCTCTTCGCAACGATC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MIMSVMASDSARAVVCTSRPFPKQKLRELVLQALYALEMAPKGEDSLVSLLMTEASVSKKNVLYALMFCKAIRANQSELD
ALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTRLIKKFSYVEGSSLILAVLGSIFDQVAQEPA
SMCG

Sequences:

>Translated_164_residues
MIMSVMASDSARAVVCTSRPFPKQKLRELVLQALYALEMAPKGEDSLVSLLMTEASVSKKNVLYALMFCKAIRANQSELD
ALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTRLIKKFSYVEGSSLILAVLGSIFDQVAQEPA
SMCG
>Mature_164_residues
MIMSVMASDSARAVVCTSRPFPKQKLRELVLQALYALEMAPKGEDSLVSLLMTEASVSKKNVLYALMFCKAIRANQSELD
ALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETTRLIKKFSYVEGSSLILAVLGSIFDQVAQEPA
SMCG

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUSB_CHLMU (Q9PL88)

Other databases:

- EMBL:   AE002160
- PIR:   A81727
- RefSeq:   NP_296598.1
- ProteinModelPortal:   Q9PL88
- SMR:   Q9PL88
- GeneID:   1246346
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0219
- TIGR:   TC_0219
- HOGENOM:   HBG413881
- OMA:   MKTYRRQ
- ProtClustDB:   PRK00202
- BioCyc:   CMUR243161:TC_0219-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 18056; Mature: 18056

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMSVMASDSARAVVCTSRPFPKQKLRELVLQALYALEMAPKGEDSLVSLLMTEASVSKK
CCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
NVLYALMFCKAIRANQSELDALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIP
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TAVLIAETTRLIKKFSYVEGSSLILAVLGSIFDQVAQEPASMCG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIMSVMASDSARAVVCTSRPFPKQKLRELVLQALYALEMAPKGEDSLVSLLMTEASVSKK
CCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
NVLYALMFCKAIRANQSELDALLNATIRTTTLANLTIIERNILRMMLFEHQQNQESSPIP
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TAVLIAETTRLIKKFSYVEGSSLILAVLGSIFDQVAQEPASMCG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935