Click here to switch to the map view.

The map label for this gene is clpX [H]

Identifier: 158317028

GI number: 158317028

Start: 6341448

End: 6342740

Strand: Reverse

Name: clpX [H]

Synonym: Franean1_5272

Alternate gene names: 158317028

Gene position: 6342740-6341448 (Counterclockwise)

Preceding gene: 158317029

Following gene: 158317027

Centisome position: 70.62

GC content: 65.43

Gene sequence:

>1293_bases
GTGGCACGCATCGGTGATGGCGGTGACCTGCTCAAGTGCTCCTTCTGCGGTAAGTCTCAGAAGCAGGTGAAGAAGCTCAT
CGCCGGCCCCGGCGTCTACATCTGCGATGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCTCCGAGTCCT
CGGAGCTCAAGTGGGAGGAGCTCCCGAAGCCCCGGGAGATCTACGAGTTCCTCGACGGGTACGTGGTCGGCCAGGAGGCG
GCGAAGAAGACGCTGTCGGTGGCCGTCTACAACCATTACAAGCGGGTGCAGGCGGGCGGTGCCTCCGGCGGTGACGCCGG
CAAGGGCGAGGTGGAGCTCGCGAAGAGCAACATCCTGCTGCTGGGCCCCACGGGGTGCGGCAAGACCCTGCTGGCGCAGA
CGCTGGCCCGGATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACCGCGCTCACCGAGGCCGGATATGTCGGCGAGGAT
GTCGAGAACATTCTTCTCAAACTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAAACCGGCATCATCTACATCGA
TGAGGTCGACAAGATCGCCCGGAAGTCGGAGAACCCCAGCATCACCCGGGACGTCTCCGGCGAGGGCGTGCAGCAGGCGC
TGCTGAAGATTCTCGAGGGAACGACGGCGAGTGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATTCAG
ATCGACACGACGAACGTCCTGTTCATCGTCGGTGGGGCTTTCGCCGGTCTGGACCGCATCATCGAGTCGCGCATCGGCAA
GAAGTCGCTGGGGTTCCGCGCGGTGCTGCACGGCAAGGACGACCCGGACGCCTCGAACGTCTTCGGTGACATCATGCCGG
AGGACCTCCTCAAGTACGGAATGATCCCGGAGTTCATCGGCCGGCTGCCGATCATCACCAGCGTCTCCAACCTCGACCGC
GAGGCGCTAATCCGGATCCTCACCGAGCCGAAGAACGCGCTCGTCCGCCAGTACAAGCGGCTGTTCGAGCTGGACGGCGT
CGACCTCGACTTCACCACCGACGCACTCGAGGCCATCGCGGACCAGGCCATCCTGCGCGGGACGGGCGCCCGCGGCCTGC
GCGCGATCATGGAAGAGGTCCTGCTCTCGGTGATGTACGACATCCCGAGCCGTAAGGACGTCGCCCGCGCGGTGATCACC
CGGGAGGTCGTGCTCGAGCACGTCAACCCGACCCTGGTGCCACGCGACGTCGCCGCGTCGAAGCGCGGCCCGCGCCAGGA
GAAGTCCGCCTGA

Upstream 100 bases:

>100_bases
CACGGGGACGGATACAGGCAGACACGCGACGACCGGGCGGTGCCCACCGCCCCCGACACGCAGGCGACACCATCGTCTGG
ACGAAGGGACTGAGTCCTCG

Downstream 100 bases:

>100_bases
CGAGATTGCGGCCGGCCGCCCCGGCACCGGTCGCCGTGGCCTCGGCGACGGCGAGGTGCCCGCGCCGGCCGCGCCCTCGG
AACGGGCGTCCCGATGCCAT

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSESSELKWEELPKPREIYEFLDGYVVGQEA
AKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYGMIPEFIGRLPIITSVSNLDR
EALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIADQAILRGTGARGLRAIMEEVLLSVMYDIPSRKDVARAVIT
REVVLEHVNPTLVPRDVAASKRGPRQEKSA

Sequences:

>Translated_430_residues
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSESSELKWEELPKPREIYEFLDGYVVGQEA
AKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYGMIPEFIGRLPIITSVSNLDR
EALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIADQAILRGTGARGLRAIMEEVLLSVMYDIPSRKDVARAVIT
REVVLEHVNPTLVPRDVAASKRGPRQEKSA
>Mature_429_residues
ARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSESSELKWEELPKPREIYEFLDGYVVGQEAA
KKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILLLGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDV
ENILLKLIQAADYDVKKAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI
DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYGMIPEFIGRLPIITSVSNLDRE
ALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIADQAILRGTGARGLRAIMEEVLLSVMYDIPSRKDVARAVITR
EVVLEHVNPTLVPRDVAASKRGPRQEKSA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=349, Percent_Identity=47.8510028653295, Blast_Score=298, Evalue=9e-81,
Organism=Escherichia coli, GI1786642, Length=409, Percent_Identity=62.1026894865526, Blast_Score=520, Evalue=1e-149,
Organism=Escherichia coli, GI1790366, Length=109, Percent_Identity=40.3669724770642, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71982908, Length=308, Percent_Identity=46.4285714285714, Blast_Score=273, Evalue=1e-73,
Organism=Caenorhabditis elegans, GI71982905, Length=308, Percent_Identity=46.4285714285714, Blast_Score=273, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI71988663, Length=408, Percent_Identity=37.9901960784314, Blast_Score=244, Evalue=8e-65,
Organism=Caenorhabditis elegans, GI71988660, Length=251, Percent_Identity=39.4422310756972, Blast_Score=163, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6319704, Length=413, Percent_Identity=40.6779661016949, Blast_Score=272, Evalue=6e-74,
Organism=Drosophila melanogaster, GI24648291, Length=336, Percent_Identity=47.6190476190476, Blast_Score=294, Evalue=8e-80,
Organism=Drosophila melanogaster, GI24648289, Length=336, Percent_Identity=47.6190476190476, Blast_Score=294, Evalue=9e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 46801; Mature: 46670

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSESSELKWEE
CCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LPKPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILL
CCCHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEE
LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE
ECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHCC
TGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
CCEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHEE
IDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYG
ECCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHC
MIPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIA
CCHHHHCCCCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DQAILRGTGARGLRAIMEEVLLSVMYDIPSRKDVARAVITREVVLEHVNPTLVPRDVAAS
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
KRGPRQEKSA
CCCCCCCCCC
>Mature Secondary Structure 
ARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELSESSELKWEE
CCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LPKPREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILL
CCCHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEE
LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAE
ECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHCC
TGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
CCEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHEE
IDTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYG
ECCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHC
MIPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIA
CCHHHHCCCCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DQAILRGTGARGLRAIMEEVLLSVMYDIPSRKDVARAVITREVVLEHVNPTLVPRDVAAS
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
KRGPRQEKSA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA