Definition | Frankia sp. EAN1pec chromosome, complete genome. |
---|---|
Accession | NC_009921 |
Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158313688
Identifier: 158313688
GI number: 158313688
Start: 2224076
End: 2224501
Strand: Direct
Name: 158313688
Synonym: Franean1_1852
Alternate gene names: NA
Gene position: 2224076-2224501 (Clockwise)
Preceding gene: 158313685
Following gene: 158313689
Centisome position: 24.76
GC content: 63.85
Gene sequence:
>426_bases ATGACGGAAGCAGACGACTACAGGCGAGGCAGACATGTGGTCTCCTCGCTGCACGCCCACTTGGTCTTCGTGACCAGGTA TCGGCGTGGAGGACTCGACGACGCGATACTGACCCGCTGCGAACAGATCATGCGCAGCGTGTGCTCCGACTTCGGCGCAG CCCTCACCGAGTTCAACGGAGAAGACGATCACGTCCACCTGCTGGTCGAGTACCCACCCAAGGTCGCGGTCTCCGCGCTG GTGAACAGCCTCAAAGGCGTGTCCGCCCGACGGCTGCGCACCGAGTTCACCGACCGGGTCAACCAGCACCTCATACGCGG CCACTTCTGGTCACCGTCCTACCTCGCAGTCTCGGCCGAAGACGCCCCACTGGCACTCGTACGCGAGTACATCGAGGAGC AACGGCGACCAGCCCCGACCCGCTAA
Upstream 100 bases:
>100_bases CGCAGCCGAACGCCCGCGCCAACGCCCGTGCCTGCCCCGGCCCGGGGTAGGCACGGTAGCGGTAACGAACGACTGCCACA CCATCCAGCATATTTGGTCT
Downstream 100 bases:
>100_bases CCCCACTCCGAAGGACGGGGCTTGCACGCTACATTTTCCTGGTCACACTGGCCGGCACGGCCGCGCCACGGGAAGAGCGG CCCGGCAGGATGGGCGGGTG
Product: transposase IS200-family protein
Products: NA
Alternate protein names: Transposase IS; IS Element Transposase; ISSoc3 OrfA Transposase; Transposase And Inactivated Derivatives; Transposase-Related Protein; Transposase TnA; Transposase OrfA; LOW QUALITY PROTEIN Transposase; Transposition Helper Protein; IS Element ISTsi3 OrfA-Like Probably Transposase; ISChy9 Transposase OrfA; ISSoc3 Transposase; ISSoc10 OrfA Transposase; Transposase Family Protein; Transposase Related Protein; LOW QUALITY PROTEIN ISSoc3 OrfA Transposase; ISCpe2 Transposase OrfA; Transposase Repeat Family IS; Transposase ORF A; Transposase OrfA For Insertion Sequence Element
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MTEADDYRRGRHVVSSLHAHLVFVTRYRRGGLDDAILTRCEQIMRSVCSDFGAALTEFNGEDDHVHLLVEYPPKVAVSAL VNSLKGVSARRLRTEFTDRVNQHLIRGHFWSPSYLAVSAEDAPLALVREYIEEQRRPAPTR
Sequences:
>Translated_141_residues MTEADDYRRGRHVVSSLHAHLVFVTRYRRGGLDDAILTRCEQIMRSVCSDFGAALTEFNGEDDHVHLLVEYPPKVAVSAL VNSLKGVSARRLRTEFTDRVNQHLIRGHFWSPSYLAVSAEDAPLALVREYIEEQRRPAPTR >Mature_140_residues TEADDYRRGRHVVSSLHAHLVFVTRYRRGGLDDAILTRCEQIMRSVCSDFGAALTEFNGEDDHVHLLVEYPPKVAVSALV NSLKGVSARRLRTEFTDRVNQHLIRGHFWSPSYLAVSAEDAPLALVREYIEEQRRPAPTR
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16059; Mature: 15928
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEADDYRRGRHVVSSLHAHLVFVTRYRRGGLDDAILTRCEQIMRSVCSDFGAALTEFNG CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC EDDHVHLLVEYPPKVAVSALVNSLKGVSARRLRTEFTDRVNQHLIRGHFWSPSYLAVSAE CCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC DAPLALVREYIEEQRRPAPTR CCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TEADDYRRGRHVVSSLHAHLVFVTRYRRGGLDDAILTRCEQIMRSVCSDFGAALTEFNG CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC EDDHVHLLVEYPPKVAVSALVNSLKGVSARRLRTEFTDRVNQHLIRGHFWSPSYLAVSAE CCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC DAPLALVREYIEEQRRPAPTR CCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA