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The map label for this gene is 157963490

Identifier: 157963490

GI number: 157963490

Start: 4479729

End: 4480295

Strand: Direct

Name: 157963490

Synonym: Spea_3678

Alternate gene names: NA

Gene position: 4479729-4480295 (Clockwise)

Preceding gene: 157963488

Following gene: 157963491

Centisome position: 86.57

GC content: 43.21

Gene sequence:

>567_bases
ATGCTCATGGAAAGAGGCGTGCTTGTTCGCTGGAATGAAGAAAGAGGCTTCGGCTTTATTAAGCCAGAAACCACTAATGC
TAAAGATGTGTTTATTCATATATCGGCGCTAAAGCATATGGCTCGCAAACCCGTTGTGGGCGACCAAATTCTGTTTCATA
GCGAGCGTCAAGCCGATGGCAAACTCAAAGCTAGTAAAGCCAATATTGAAGGCGTAGCCGTTGTTGCCAATAGAGCTACC
AACAAATATCCCCACAAGCGCCAACACCAAGCAAAATCTTCGTCTTTCAGCACCATACTTATCCCTCTTCTAATTCTATT
AGGCATAGGCACGTTGGGTTTAAAAAAGTATGAAGAAATGACTGCAACACCAGTACTGACTAATAAAGATGTTGAACAAA
TGAAGTTTAACCCTGTGCAGAGCTTTCGTTGTGAAGCAGGTAAAACCCATTGCAGTCATATGAGTTCATGCGATGAAGCC
AAGTTTTACATCAAATACTGCCCCAGCACTCAAATGGATGGCGACAACGATGGTATCCCTTGTGAAAGACAACTTTGCAG
TTGGTGA

Upstream 100 bases:

>100_bases
TAATCAATTAGTTTGATCATAAATAAGGCAGACAAATCAAGTGTCGGGTAGTATCTTTCCATGAAATTTAAATTGGTGTA
AATAAAGGAAGTTACATAAG

Downstream 100 bases:

>100_bases
TACTTATGTTTAGCCCTTAGTTTAGCCGTGCAACCAAACATTGTGCAAAATCAATGCATTACACACCAACATATGGCAAG
ATTGCTCTCTTAATAGGTAA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: Cold Shock Domain-Contain Protein; Cold-Shock Protein; Cold Shock Family Protein

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLMERGVLVRWNEERGFGFIKPETTNAKDVFIHISALKHMARKPVVGDQILFHSERQADGKLKASKANIEGVAVVANRAT
NKYPHKRQHQAKSSSFSTILIPLLILLGIGTLGLKKYEEMTATPVLTNKDVEQMKFNPVQSFRCEAGKTHCSHMSSCDEA
KFYIKYCPSTQMDGDNDGIPCERQLCSW

Sequences:

>Translated_188_residues
MLMERGVLVRWNEERGFGFIKPETTNAKDVFIHISALKHMARKPVVGDQILFHSERQADGKLKASKANIEGVAVVANRAT
NKYPHKRQHQAKSSSFSTILIPLLILLGIGTLGLKKYEEMTATPVLTNKDVEQMKFNPVQSFRCEAGKTHCSHMSSCDEA
KFYIKYCPSTQMDGDNDGIPCERQLCSW
>Mature_188_residues
MLMERGVLVRWNEERGFGFIKPETTNAKDVFIHISALKHMARKPVVGDQILFHSERQADGKLKASKANIEGVAVVANRAT
NKYPHKRQHQAKSSSFSTILIPLLILLGIGTLGLKKYEEMTATPVLTNKDVEQMKFNPVQSFRCEAGKTHCSHMSSCDEA
KFYIKYCPSTQMDGDNDGIPCERQLCSW

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21159; Mature: 21159

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMERGVLVRWNEERGFGFIKPETTNAKDVFIHISALKHMARKPVVGDQILFHSERQADG
CCCCCCEEEEECCCCCCEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEECCCCCCC
KLKASKANIEGVAVVANRATNKYPHKRQHQAKSSSFSTILIPLLILLGIGTLGLKKYEEM
CEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH
TATPVLTNKDVEQMKFNPVQSFRCEAGKTHCSHMSSCDEAKFYIKYCPSTQMDGDNDGIP
HCCCCCCCCCHHHHHCCCHHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
CERQLCSW
HHHHHCCC
>Mature Secondary Structure
MLMERGVLVRWNEERGFGFIKPETTNAKDVFIHISALKHMARKPVVGDQILFHSERQADG
CCCCCCEEEEECCCCCCEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEECCCCCCC
KLKASKANIEGVAVVANRATNKYPHKRQHQAKSSSFSTILIPLLILLGIGTLGLKKYEEM
CEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH
TATPVLTNKDVEQMKFNPVQSFRCEAGKTHCSHMSSCDEAKFYIKYCPSTQMDGDNDGIP
HCCCCCCCCCHHHHHCCCHHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
CERQLCSW
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA