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The map label for this gene is yhdW [H]

Identifier: 157963366

GI number: 157963366

Start: 4339387

End: 4340088

Strand: Direct

Name: yhdW [H]

Synonym: Spea_3552

Alternate gene names: 157963366

Gene position: 4339387-4340088 (Clockwise)

Preceding gene: 157963365

Following gene: 157963368

Centisome position: 83.86

GC content: 45.3

Gene sequence:

>702_bases
ATGATGATATTTGCCCATAGAGGAGCCAGTGGTTATCTGGCTGAAAACAGCCTTGCCGCCTTTGCAAAGGCCGTTGATCT
TGGAGCCACTGCGGTTGAGCTCGATATCCACTTAGTCGAAGATGAACTGTACGTGTTTCACGACAGACGACTTGAACCTA
AAAGCACGGGAAGTGGTCTTATTGAGCAATACACTAAGCAAGCTTTGAGTCTGATTACTATCGACGGGGAGCCTATTCCG
ACTCTGGTGCAAGTATTAAGTTTACTAAAACCTCACAACACCTTGGTCAACATTGAGCTTAAAGGATTGGGCTGTCTCGA
CGCCTTTATCGCCCTCTACCCTAAACTTATCAATGAACTTGGGTACGATAAAAACAAACTGCTAATGTCATCGTTTAACC
ACCCATTTCTCGCAACCTTTAAACAGCAATACCCTGCGGCGTTAATCGCCCCACTCATAGAAGGGGTACCGCTGAATTTT
GCAGGCATTGTCAGCCAACTCAATGCTTACTCCATTCATCTTGGACTAAGCTTCACCACCCAAGAGATGGTTGATGACGC
CCATAAACGCGGTGCCAAAGTCTATGTCTATACCGTAGATAATCTTGACGATCTCGATATGCTTAAGCAAATGGGTGTCG
ATGGTGTATTTACTAACTATCCTGACCGAGCGATTAGCTACCTTGGCCTAGATTTAGGTTAA

Upstream 100 bases:

>100_bases
GCTGGCTTACCCGCAGCTTGAAGTGCATCTTTCTTCTAACCAGAATAAAGACGTTCAGAGCTTATTGAGAACCTAAATTA
GAGGCGGTTAAGACAGCATT

Downstream 100 bases:

>100_bases
ATAAAGCCATCTACAGCGGGGATAAAATAGCGACAAGTTGCCTAAATTAATGAAAACAATCTACACTAAAATTAATAACT
TAAACTTGTCTGTTGCGCTG

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MMIFAHRGASGYLAENSLAAFAKAVDLGATAVELDIHLVEDELYVFHDRRLEPKSTGSGLIEQYTKQALSLITIDGEPIP
TLVQVLSLLKPHNTLVNIELKGLGCLDAFIALYPKLINELGYDKNKLLMSSFNHPFLATFKQQYPAALIAPLIEGVPLNF
AGIVSQLNAYSIHLGLSFTTQEMVDDAHKRGAKVYVYTVDNLDDLDMLKQMGVDGVFTNYPDRAISYLGLDLG

Sequences:

>Translated_233_residues
MMIFAHRGASGYLAENSLAAFAKAVDLGATAVELDIHLVEDELYVFHDRRLEPKSTGSGLIEQYTKQALSLITIDGEPIP
TLVQVLSLLKPHNTLVNIELKGLGCLDAFIALYPKLINELGYDKNKLLMSSFNHPFLATFKQQYPAALIAPLIEGVPLNF
AGIVSQLNAYSIHLGLSFTTQEMVDDAHKRGAKVYVYTVDNLDDLDMLKQMGVDGVFTNYPDRAISYLGLDLG
>Mature_233_residues
MMIFAHRGASGYLAENSLAAFAKAVDLGATAVELDIHLVEDELYVFHDRRLEPKSTGSGLIEQYTKQALSLITIDGEPIP
TLVQVLSLLKPHNTLVNIELKGLGCLDAFIALYPKLINELGYDKNKLLMSSFNHPFLATFKQQYPAALIAPLIEGVPLNF
AGIVSQLNAYSIHLGLSFTTQEMVDDAHKRGAKVYVYTVDNLDDLDMLKQMGVDGVFTNYPDRAISYLGLDLG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=235, Percent_Identity=29.3617021276596, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 25618; Mature: 25618

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIFAHRGASGYLAENSLAAFAKAVDLGATAVELDIHLVEDELYVFHDRRLEPKSTGSGL
CEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCHH
IEQYTKQALSLITIDGEPIPTLVQVLSLLKPHNTLVNIELKGLGCLDAFIALYPKLINEL
HHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
GYDKNKLLMSSFNHPFLATFKQQYPAALIAPLIEGVPLNFAGIVSQLNAYSIHLGLSFTT
CCCCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHCCEEEEEEEEEEHH
QEMVDDAHKRGAKVYVYTVDNLDDLDMLKQMGVDGVFTNYPDRAISYLGLDLG
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MMIFAHRGASGYLAENSLAAFAKAVDLGATAVELDIHLVEDELYVFHDRRLEPKSTGSGL
CEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCHH
IEQYTKQALSLITIDGEPIPTLVQVLSLLKPHNTLVNIELKGLGCLDAFIALYPKLINEL
HHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
GYDKNKLLMSSFNHPFLATFKQQYPAALIAPLIEGVPLNFAGIVSQLNAYSIHLGLSFTT
CCCCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHCCEEEEEEEEEEHH
QEMVDDAHKRGAKVYVYTVDNLDDLDMLKQMGVDGVFTNYPDRAISYLGLDLG
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]