Click here to switch to the map view.

The map label for this gene is ygiM [H]

Identifier: 157963303

GI number: 157963303

Start: 4261131

End: 4261676

Strand: Direct

Name: ygiM [H]

Synonym: Spea_3489

Alternate gene names: 157963303

Gene position: 4261131-4261676 (Clockwise)

Preceding gene: 157963302

Following gene: 157963304

Centisome position: 82.35

GC content: 49.08

Gene sequence:

>546_bases
ATGTTACTTTCCCCTTCTTTGCTTGCAGCAAACCAAACGCGCTACATCTCAGATGATGTTTACATCTACCTCCATGGTGG
CCCAGGAACTCAGTTCCGTATCTTGGGCAGCATCGAAGCTGGCCAAGAGGTAACGTCACTTAAGGAAACCCAAGGCGACT
ACAGTAAAATAGTCGACCACAAAGGTCGTGAAGGCTGGGTTCAGAGCAAGATGCTAAGCGCTAAAATGAGCCTTCGTGTT
CAGCTTCCTGCGATACAAGCAGAGCTTAAGCAAACCAAAGCTGAACTAGAGACAGCATTAAGCAGCGGCGATAACAATGC
CCAGGAGCTGAGACAAGTTAAATCTCAACTTGCTGCGGCTCAAAAAGCCTTGGACAGCGCTAGCAACGAGCGCGATAGCG
CCAAGGCTAAACTTGCGAGTATGCAGAGAAACGAACGTTTCGAGATGTGGAAGCAAGGTGGTTTTATCGCAGCGGGTGGT
TTACTACTGGGTATCATCTTAGTCTATCTACCAAGGCCACAGCGTAAGCCTAAGAGCCGCTGGTAA

Upstream 100 bases:

>100_bases
TTTTGCCACTTGCATTACCCCCTTTAAATCCCTAGCATGTGGGCTAAATTTCGTAGATGAGAATAGATTAGTGTTAAGAA
TTCTAATTATTGTGGGAACG

Downstream 100 bases:

>100_bases
CTAATGATATTGCCGCTGCAGTCTACTGCTTAGCAACATTATTAGTTTAGCTATCTAAACAACAGTCACAGCGTAAGCCT
AAGAGTCGCTGGTAACTAAT

Product: SH3 type 3 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MLLSPSLLAANQTRYISDDVYIYLHGGPGTQFRILGSIEAGQEVTSLKETQGDYSKIVDHKGREGWVQSKMLSAKMSLRV
QLPAIQAELKQTKAELETALSSGDNNAQELRQVKSQLAAAQKALDSASNERDSAKAKLASMQRNERFEMWKQGGFIAAGG
LLLGIILVYLPRPQRKPKSRW

Sequences:

>Translated_181_residues
MLLSPSLLAANQTRYISDDVYIYLHGGPGTQFRILGSIEAGQEVTSLKETQGDYSKIVDHKGREGWVQSKMLSAKMSLRV
QLPAIQAELKQTKAELETALSSGDNNAQELRQVKSQLAAAQKALDSASNERDSAKAKLASMQRNERFEMWKQGGFIAAGG
LLLGIILVYLPRPQRKPKSRW
>Mature_181_residues
MLLSPSLLAANQTRYISDDVYIYLHGGPGTQFRILGSIEAGQEVTSLKETQGDYSKIVDHKGREGWVQSKMLSAKMSLRV
QLPAIQAELKQTKAELETALSSGDNNAQELRQVKSQLAAAQKALDSASNERDSAKAKLASMQRNERFEMWKQGGFIAAGG
LLLGIILVYLPRPQRKPKSRW

Specific function: Unknown

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1605 [H]

Homologues:

Organism=Escherichia coli, GI1789435, Length=142, Percent_Identity=30.9859154929577, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR016476 [H]

Pfam domain/function: PF08239 SH3_3 [H]

EC number: NA

Molecular weight: Translated: 20016; Mature: 20016

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSPSLLAANQTRYISDDVYIYLHGGPGTQFRILGSIEAGQEVTSLKETQGDYSKIVDH
CCCCCCHHHCCCCEEECCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHC
KGREGWVQSKMLSAKMSLRVQLPAIQAELKQTKAELETALSSGDNNAQELRQVKSQLAAA
CCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QKALDSASNERDSAKAKLASMQRNERFEMWKQGGFIAAGGLLLGIILVYLPRPQRKPKSR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCC
W
C
>Mature Secondary Structure
MLLSPSLLAANQTRYISDDVYIYLHGGPGTQFRILGSIEAGQEVTSLKETQGDYSKIVDH
CCCCCCHHHCCCCEEECCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHC
KGREGWVQSKMLSAKMSLRVQLPAIQAELKQTKAELETALSSGDNNAQELRQVKSQLAAA
CCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QKALDSASNERDSAKAKLASMQRNERFEMWKQGGFIAAGGLLLGIILVYLPRPQRKPKSR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]