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The map label for this gene is yhcM [H]

Identifier: 157963280

GI number: 157963280

Start: 4236894

End: 4237751

Strand: Direct

Name: yhcM [H]

Synonym: Spea_3466

Alternate gene names: 157963280

Gene position: 4236894-4237751 (Clockwise)

Preceding gene: 157963273

Following gene: 157963282

Centisome position: 81.88

GC content: 49.42

Gene sequence:

>858_bases
GTGCTGTGTTTCGATGAGTTTTTTGTCAGCGATATCGGCGATGCGATGATCCTCGCCAAGCTATTTGAAGCCCTGTTAGA
GCAAGGTATTACCTTAGTCGCCACCTCCAATATTCCTATCGATGAGCTTTATAAAAATGGCCTGCAGCGACAGCGTTTTC
TGCCGACTATCGAGCTACTTAAGCGCTTTACTCAAGAGATCCATTTAAGCGGATTGCAAGACCACCGCTTACATCAATCA
GCGCACTTAAGCACGGAGCTAGCCACAGGCCAGCGTTACTTTGTAGACGCGTTTGATAGCGACTCGATTGAGTGGCCAGC
AAGATTTGAGCAGGTTTTTAATGCGGGCCCTCCAAGCGAGACTGCGGCATGGATAGACGCACCGTTATTAGTCCATGGCC
GTATAATCGATACCGTAAAATACAACCAGCGTGTAGCCTGGTTTGAGTTCGACGCCCTATGTGATGGCCCACGTTCCCAG
CTCGATTATATCGAAATAGCCAGCCGCTTTAGCACGGTTATACTCACTAAAGTCCCCGTATTAGGCGGAGAGCCTCGCAG
TTGGATTAGAGCGCGCGGCACAGAAGATGGTGCGCAGCCTTTTGAGACAGTAGCAATAGAAACTGCTGCTTTTGAAACAG
CTGCTTTTAATACCGGCAACAGGCAACTGTCTTATGCGGTGAGTGATGACCCCGCGCGGCGGTTTATCAGCCTCATCGAT
GAGTTATACGATCAAGGTGTTGAGCTGTATATTCAAGCCTATGTGCCTATGGGTGAACTCTACAGCGGCGGCGCGTTAAG
CTTTGAGTTCAGGCGCACATTGAGTCGCCTGACTCAGATGCAGAGTTTAGAATATTGA

Upstream 100 bases:

>100_bases
ACATAAATATAGATGGGGTTAGTAACTAAGTAAAGAAGGTGTAACTAGCAATCGCGATCCACTTAAGCGCATTGCTAAAC
GGGTAGCGCAAGAGTGCCGA

Downstream 100 bases:

>100_bases
TTTCCCCAATAACGGGGGAATTGGCTTTGGCCTCTAGAATTAACGTTAGACTTCGGCTAACAACCTAGATAAATCAAGCT
CCGCTTGATAAAGGTCGTGA

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MLCFDEFFVSDIGDAMILAKLFEALLEQGITLVATSNIPIDELYKNGLQRQRFLPTIELLKRFTQEIHLSGLQDHRLHQS
AHLSTELATGQRYFVDAFDSDSIEWPARFEQVFNAGPPSETAAWIDAPLLVHGRIIDTVKYNQRVAWFEFDALCDGPRSQ
LDYIEIASRFSTVILTKVPVLGGEPRSWIRARGTEDGAQPFETVAIETAAFETAAFNTGNRQLSYAVSDDPARRFISLID
ELYDQGVELYIQAYVPMGELYSGGALSFEFRRTLSRLTQMQSLEY

Sequences:

>Translated_285_residues
MLCFDEFFVSDIGDAMILAKLFEALLEQGITLVATSNIPIDELYKNGLQRQRFLPTIELLKRFTQEIHLSGLQDHRLHQS
AHLSTELATGQRYFVDAFDSDSIEWPARFEQVFNAGPPSETAAWIDAPLLVHGRIIDTVKYNQRVAWFEFDALCDGPRSQ
LDYIEIASRFSTVILTKVPVLGGEPRSWIRARGTEDGAQPFETVAIETAAFETAAFNTGNRQLSYAVSDDPARRFISLID
ELYDQGVELYIQAYVPMGELYSGGALSFEFRRTLSRLTQMQSLEY
>Mature_285_residues
MLCFDEFFVSDIGDAMILAKLFEALLEQGITLVATSNIPIDELYKNGLQRQRFLPTIELLKRFTQEIHLSGLQDHRLHQS
AHLSTELATGQRYFVDAFDSDSIEWPARFEQVFNAGPPSETAAWIDAPLLVHGRIIDTVKYNQRVAWFEFDALCDGPRSQ
LDYIEIASRFSTVILTKVPVLGGEPRSWIRARGTEDGAQPFETVAIETAAFETAAFNTGNRQLSYAVSDDPARRFISLID
ELYDQGVELYIQAYVPMGELYSGGALSFEFRRTLSRLTQMQSLEY

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=317, Percent_Identity=29.6529968454259, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI1789627, Length=288, Percent_Identity=37.1527777777778, Blast_Score=156, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17505769, Length=322, Percent_Identity=27.3291925465839, Blast_Score=114, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6320783, Length=305, Percent_Identity=29.8360655737705, Blast_Score=111, Evalue=2e-25,
Organism=Drosophila melanogaster, GI20129913, Length=316, Percent_Identity=30.0632911392405, Blast_Score=108, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 32266; Mature: 32266

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCFDEFFVSDIGDAMILAKLFEALLEQGITLVATSNIPIDELYKNGLQRQRFLPTIELL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
KRFTQEIHLSGLQDHRLHQSAHLSTELATGQRYFVDAFDSDSIEWPARFEQVFNAGPPSE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCC
TAAWIDAPLLVHGRIIDTVKYNQRVAWFEFDALCDGPRSQLDYIEIASRFSTVILTKVPV
CHHHHCCCCEEECEEEEEEECCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
LGGEPRSWIRARGTEDGAQPFETVAIETAAFETAAFNTGNRQLSYAVSDDPARRFISLID
CCCCCHHHHHHCCCCCCCCCHHHHEEHHHHHHHHEECCCCCEEEEEECCCHHHHHHHHHH
ELYDQGVELYIQAYVPMGELYSGGALSFEFRRTLSRLTQMQSLEY
HHHHCCCEEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCFDEFFVSDIGDAMILAKLFEALLEQGITLVATSNIPIDELYKNGLQRQRFLPTIELL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
KRFTQEIHLSGLQDHRLHQSAHLSTELATGQRYFVDAFDSDSIEWPARFEQVFNAGPPSE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCC
TAAWIDAPLLVHGRIIDTVKYNQRVAWFEFDALCDGPRSQLDYIEIASRFSTVILTKVPV
CHHHHCCCCEEECEEEEEEECCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
LGGEPRSWIRARGTEDGAQPFETVAIETAAFETAAFNTGNRQLSYAVSDDPARRFISLID
CCCCCHHHHHHCCCCCCCCCHHHHEEHHHHHHHHEECCCCCEEEEEECCCHHHHHHHHHH
ELYDQGVELYIQAYVPMGELYSGGALSFEFRRTLSRLTQMQSLEY
HHHHCCCEEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]