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The map label for this gene is yedQ [H]

Identifier: 157963226

GI number: 157963226

Start: 4171620

End: 4172660

Strand: Direct

Name: yedQ [H]

Synonym: Spea_3412

Alternate gene names: 157963226

Gene position: 4171620-4172660 (Clockwise)

Preceding gene: 157963223

Following gene: 157963227

Centisome position: 80.62

GC content: 40.44

Gene sequence:

>1041_bases
ATGAAAAACATAGAGTTAAATAGTACCTACAACTTAAGGAGGGTCGTGTTAATTGGCATGTGCACGCTTTTAGGCTGCCT
GAGTTTTCTACTCGGTATTATCAACCTCTCAATCGCTGCAAAGTGGATAACACTTGGTTTTATCGAACTATTCTACGCAC
TGTGTTCATTCACACTGGCGGTACTAGCAGTCAAAAGAAGACACCAATTTTGGCAAGTTATCCTGTATATTTTTGCCTTA
ACCGTTATCGTCATTTACGCCGTATCTCTCTCAAAAACCATAGGTTCAATGATCTGCTGGGTACTGGTTTTACCCACGGT
TTACTATCTTCTTTTAGGTAAGAAGTTTGCGAATTTACCGGTAATTATTCTTTTCTCTGCAGTAGTTGCAGACATCATTG
GTAAATATGGTTTTACCGTTAATCCGCTGCTAGTTAATTTCATTTTTAGTTATTTGCTTATTTGGGCTGTTTCTCATATT
TACGAGAAAAACCGCGCAAATTCAGAAGCTAAATTACAAAAGCTCGCACTGCAAGATCCACTGACATTAAGCTATAACCG
ACTAGCGCTAACCAAGTATTTTGAGAATGTGGGTTCAAAGCCGTCTCTGCAAGAGCTTGACGAAGAGCTGCATCTACTGA
TCTTAGATATCGATTTCTTTAAACAGGTAAACGATGAGTATGGTCATGAGGCAGGGGATACGGTTCTACAAGAGTGCGCA
AAAATTATCAGTCGCATTGCCGGTGATAAACAGACATTTAGGATCGGTGGTGAAGAATTTTGCGTAATGATTGAAAACAA
AAAACAAGATGAAGCGATAGCACTTGCCCAGTTAATTAGAACAAAACTGGCTCAACATACTTTTAGACTCGCAGAGCAAG
ACAATATCAATATCACCGTCAGCATTGGGCTTAGCAATTATCAACCAGGTATGGCGTTACCAAGTCTATTACGCCAAGCA
GATCAGCGGTTATATCGCGCTAAACACACAGGTCGAAACCAAGTGATTTACCACAACGCACCACTTGCGGCTTCGGCATA
A

Upstream 100 bases:

>100_bases
ATCAGTTCCTTTAATATCTCTTATCAAAAATGGTTATTTGAAATTAAAGCGAAATACAATAACATATAAGTAACACAATG
GAGTTGGGCCTAATACGGAT

Downstream 100 bases:

>100_bases
CAAAAATGGGACATGCTTGCAGCATAGGTAGATCCTGTTCGCCCTTGTCCAAAGTAGAAGCAGCGTTAAACTAACGCCTT
TAGCCTAGCAAAGCTCGATA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MKNIELNSTYNLRRVVLIGMCTLLGCLSFLLGIINLSIAAKWITLGFIELFYALCSFTLAVLAVKRRHQFWQVILYIFAL
TVIVIYAVSLSKTIGSMICWVLVLPTVYYLLLGKKFANLPVIILFSAVVADIIGKYGFTVNPLLVNFIFSYLLIWAVSHI
YEKNRANSEAKLQKLALQDPLTLSYNRLALTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGDTVLQECA
KIISRIAGDKQTFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAEQDNINITVSIGLSNYQPGMALPSLLRQA
DQRLYRAKHTGRNQVIYHNAPLAASA

Sequences:

>Translated_346_residues
MKNIELNSTYNLRRVVLIGMCTLLGCLSFLLGIINLSIAAKWITLGFIELFYALCSFTLAVLAVKRRHQFWQVILYIFAL
TVIVIYAVSLSKTIGSMICWVLVLPTVYYLLLGKKFANLPVIILFSAVVADIIGKYGFTVNPLLVNFIFSYLLIWAVSHI
YEKNRANSEAKLQKLALQDPLTLSYNRLALTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGDTVLQECA
KIISRIAGDKQTFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAEQDNINITVSIGLSNYQPGMALPSLLRQA
DQRLYRAKHTGRNQVIYHNAPLAASA
>Mature_346_residues
MKNIELNSTYNLRRVVLIGMCTLLGCLSFLLGIINLSIAAKWITLGFIELFYALCSFTLAVLAVKRRHQFWQVILYIFAL
TVIVIYAVSLSKTIGSMICWVLVLPTVYYLLLGKKFANLPVIILFSAVVADIIGKYGFTVNPLLVNFIFSYLLIWAVSHI
YEKNRANSEAKLQKLALQDPLTLSYNRLALTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGDTVLQECA
KIISRIAGDKQTFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAEQDNINITVSIGLSNYQPGMALPSLLRQA
DQRLYRAKHTGRNQVIYHNAPLAASA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787802, Length=302, Percent_Identity=33.112582781457, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=37.4269005847953, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=37.125748502994, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=33.8624338624339, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=200, Percent_Identity=29.5, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787816, Length=133, Percent_Identity=36.8421052631579, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693134, Length=127, Percent_Identity=31.496062992126, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787056, Length=255, Percent_Identity=28.6274509803922, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=31.3513513513514, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=29.1428571428571, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39056; Mature: 39056

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIELNSTYNLRRVVLIGMCTLLGCLSFLLGIINLSIAAKWITLGFIELFYALCSFTLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAVKRRHQFWQVILYIFALTVIVIYAVSLSKTIGSMICWVLVLPTVYYLLLGKKFANLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VIILFSAVVADIIGKYGFTVNPLLVNFIFSYLLIWAVSHIYEKNRANSEAKLQKLALQDP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
LTLSYNRLALTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGDTVLQECA
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHH
KIISRIAGDKQTFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAEQDNINITV
HHHHHHCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
SIGLSNYQPGMALPSLLRQADQRLYRAKHTGRNQVIYHNAPLAASA
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MKNIELNSTYNLRRVVLIGMCTLLGCLSFLLGIINLSIAAKWITLGFIELFYALCSFTLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAVKRRHQFWQVILYIFALTVIVIYAVSLSKTIGSMICWVLVLPTVYYLLLGKKFANLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VIILFSAVVADIIGKYGFTVNPLLVNFIFSYLLIWAVSHIYEKNRANSEAKLQKLALQDP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
LTLSYNRLALTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGDTVLQECA
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHH
KIISRIAGDKQTFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAEQDNINITV
HHHHHHCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
SIGLSNYQPGMALPSLLRQADQRLYRAKHTGRNQVIYHNAPLAASA
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA