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The map label for this gene is ocd2 [H]

Identifier: 157962987

GI number: 157962987

Start: 3884520

End: 3885467

Strand: Direct

Name: ocd2 [H]

Synonym: Spea_3170

Alternate gene names: 157962987

Gene position: 3884520-3885467 (Clockwise)

Preceding gene: 157962984

Following gene: 157962988

Centisome position: 75.07

GC content: 48.52

Gene sequence:

>948_bases
ATGTTAGTCATTAATGCAGAATCAGTTCATCAGTCACTTAATTTCCCCGATCTAATCAATGCCCTCGATGAGACATTTTC
TCGCCCAGCAGGCATGCCCCAACGCCAAGTGTTCGGCCTAGATGAGTCTGGTGAGCATAATGATGCTTTTGCCGTTTTAC
CTTCATGGAATGAAAAAGCGATAGCCGTTAAAGCCTTTACTTACTTCCCCGGCAACCCGAAAAAAGATCCTGCACTTGCT
AGCTTATATTCAAAAATATTAGTCTTTAGCCGTGAAACCGGTGAGCCACAAGCCCTGGTCGATGGCACCAGTGTCACCTT
CTGGCGTACAGCCGCTATCTCTGCACTAGGCAGTCGTTATCTATCCCGTGAAGACTCAAGTAAATTGCTGGTTTGCGGCA
CGGGTAACTTAGCTTCCTTTATGGCGCTCGCTCACGCCAGCGTGCGCCCTATTACCCAAATCACAATTTGGGGACGCAGC
GAAGAAAAGGCTCGTGCCACTATTGAGCTTATCCGTAATAAGCGCCCAGATATTGAAGTATTGCTATGCACAGATCTTGA
ACAAAGCGTGCGTGAAGCCGATATCATTAGCTGCGCAACAGGAAGCCCGACTCCGCTGTTTGATGGTGATTGGGTACAAC
CGGGCACCCATACCGACTTTGTGGGTAACCATAACCATGACAGACGTGAGTTCGACACCAAGTTGATCCGCAAGTCTTCG
GTATTTGTCGATTCAAAAATCAACGTGTTTGCGGAAGCGGGCGAACTGCTCCTGCCTATTGAAGAGGGGGACTTCTCTCT
CGATCAAGTTAAGGGGGAGTTGAGCCAGCTTTGTACGGCACAAATTAAAGGTCGTACTAGCAATGATGAAATCACCATCT
TCAAGACGGTCGGTACGGCACTTGCCGATCTTGTCGGTGCGCAACTGGTGTTTTCAAAGCTAAGCTAG

Upstream 100 bases:

>100_bases
CATTCTAATTATTAAGTTGAAATAAAATTCACCAGCTAAAAGTTCATTGACTCAAGTAGCGCCTGCAAATAGTATAAAAT
ATACTTAAATGGAGGTTTTC

Downstream 100 bases:

>100_bases
ACGTCAAGCTAACTTGTGGCGAGCAGTTCTTTGCTGCCTAAAAAGAGAAGCGCATTAGGCTTCTCTTTCCTAATCATCTA
ACTCAATCATTTACTTATTG

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MLVINAESVHQSLNFPDLINALDETFSRPAGMPQRQVFGLDESGEHNDAFAVLPSWNEKAIAVKAFTYFPGNPKKDPALA
SLYSKILVFSRETGEPQALVDGTSVTFWRTAAISALGSRYLSREDSSKLLVCGTGNLASFMALAHASVRPITQITIWGRS
EEKARATIELIRNKRPDIEVLLCTDLEQSVREADIISCATGSPTPLFDGDWVQPGTHTDFVGNHNHDRREFDTKLIRKSS
VFVDSKINVFAEAGELLLPIEEGDFSLDQVKGELSQLCTAQIKGRTSNDEITIFKTVGTALADLVGAQLVFSKLS

Sequences:

>Translated_315_residues
MLVINAESVHQSLNFPDLINALDETFSRPAGMPQRQVFGLDESGEHNDAFAVLPSWNEKAIAVKAFTYFPGNPKKDPALA
SLYSKILVFSRETGEPQALVDGTSVTFWRTAAISALGSRYLSREDSSKLLVCGTGNLASFMALAHASVRPITQITIWGRS
EEKARATIELIRNKRPDIEVLLCTDLEQSVREADIISCATGSPTPLFDGDWVQPGTHTDFVGNHNHDRREFDTKLIRKSS
VFVDSKINVFAEAGELLLPIEEGDFSLDQVKGELSQLCTAQIKGRTSNDEITIFKTVGTALADLVGAQLVFSKLS
>Mature_315_residues
MLVINAESVHQSLNFPDLINALDETFSRPAGMPQRQVFGLDESGEHNDAFAVLPSWNEKAIAVKAFTYFPGNPKKDPALA
SLYSKILVFSRETGEPQALVDGTSVTFWRTAAISALGSRYLSREDSSKLLVCGTGNLASFMALAHASVRPITQITIWGRS
EEKARATIELIRNKRPDIEVLLCTDLEQSVREADIISCATGSPTPLFDGDWVQPGTHTDFVGNHNHDRREFDTKLIRKSS
VFVDSKINVFAEAGELLLPIEEGDFSLDQVKGELSQLCTAQIKGRTSNDEITIFKTVGTALADLVGAQLVFSKLS

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=316, Percent_Identity=28.1645569620253, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI62241008, Length=283, Percent_Identity=27.9151943462898, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24642678, Length=267, Percent_Identity=28.8389513108614, Blast_Score=102, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34502; Mature: 34502

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVINAESVHQSLNFPDLINALDETFSRPAGMPQRQVFGLDESGEHNDAFAVLPSWNEKA
CEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHEECCCCCCCCCCEEEEEECCCCCE
IAVKAFTYFPGNPKKDPALASLYSKILVFSRETGEPQALVDGTSVTFWRTAAISALGSRY
EEEEEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCCEEECCCEEEEHHHHHHHHHHHHH
LSREDSSKLLVCGTGNLASFMALAHASVRPITQITIWGRSEEKARATIELIRNKRPDIEV
HCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEE
LLCTDLEQSVREADIISCATGSPTPLFDGDWVQPGTHTDFVGNHNHDRREFDTKLIRKSS
EEECCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
VFVDSKINVFAEAGELLLPIEEGDFSLDQVKGELSQLCTAQIKGRTSNDEITIFKTVGTA
EEECCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHH
LADLVGAQLVFSKLS
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MLVINAESVHQSLNFPDLINALDETFSRPAGMPQRQVFGLDESGEHNDAFAVLPSWNEKA
CEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHEECCCCCCCCCCEEEEEECCCCCE
IAVKAFTYFPGNPKKDPALASLYSKILVFSRETGEPQALVDGTSVTFWRTAAISALGSRY
EEEEEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCCEEECCCEEEEHHHHHHHHHHHHH
LSREDSSKLLVCGTGNLASFMALAHASVRPITQITIWGRSEEKARATIELIRNKRPDIEV
HCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEE
LLCTDLEQSVREADIISCATGSPTPLFDGDWVQPGTHTDFVGNHNHDRREFDTKLIRKSS
EEECCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
VFVDSKINVFAEAGELLLPIEEGDFSLDQVKGELSQLCTAQIKGRTSNDEITIFKTVGTA
EEECCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHH
LADLVGAQLVFSKLS
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]