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The map label for this gene is ybeD [C]

Identifier: 157962971

GI number: 157962971

Start: 3859846

End: 3860112

Strand: Direct

Name: ybeD [C]

Synonym: Spea_3154

Alternate gene names: 157962971

Gene position: 3859846-3860112 (Clockwise)

Preceding gene: 157962970

Following gene: 157962972

Centisome position: 74.59

GC content: 41.95

Gene sequence:

>267_bases
ATGTTAGATACTAAATTTGATGAACTGATGGAATTTCCTGCTTCTTTTCCATTTAAAATTGTAGGCGATGCGAGTGACAC
ATTAGCTGACCGTGTTGTAGCTGTGGCACAAAGCCTAGCACCTGGCGATTATGCGCCGACAACAAAAGCTTCAAGCAAAG
GCACTTACAACTCAGTAACCATACGTATAACCGTCACGAGTAAAGAGCATATCGAGAAACTTTATACTCAACTTGCGGCG
ATTGAAGGCGTTAAACGCGTACTATAA

Upstream 100 bases:

>100_bases
GGTGGCTTCTTGCGTTTTATACTTCAAACAAGCCTATACCACTTGAATAAGGTATAATTGCCACCATATAAGTGAATATT
GAAATCTTTGAGAGTGAAAC

Downstream 100 bases:

>100_bases
ATATTAATCATTAATGATAAATGTGATCCGTATTACATTTATCATTTTGAAGCGTATAATAGCCCGCACAAATATTTGAG
GGGAGAGGTTGCCCTTGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MLDTKFDELMEFPASFPFKIVGDASDTLADRVVAVAQSLAPGDYAPTTKASSKGTYNSVTIRITVTSKEHIEKLYTQLAA
IEGVKRVL

Sequences:

>Translated_88_residues
MLDTKFDELMEFPASFPFKIVGDASDTLADRVVAVAQSLAPGDYAPTTKASSKGTYNSVTIRITVTSKEHIEKLYTQLAA
IEGVKRVL
>Mature_88_residues
MLDTKFDELMEFPASFPFKIVGDASDTLADRVVAVAQSLAPGDYAPTTKASSKGTYNSVTIRITVTSKEHIEKLYTQLAA
IEGVKRVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=87, Percent_Identity=50.5747126436782, Blast_Score=92, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3154_SHEPA (A8H7D3)

Other databases:

- EMBL:   CP000851
- RefSeq:   YP_001503005.1
- ProteinModelPortal:   A8H7D3
- SMR:   A8H7D3
- STRING:   A8H7D3
- GeneID:   5663543
- GenomeReviews:   CP000851_GR
- KEGG:   spl:Spea_3154
- NMPDR:   fig|398579.3.peg.2732
- eggNOG:   COG2921
- HOGENOM:   HBG297220
- OMA:   TSKEHIE
- ProtClustDB:   PRK04998
- BioCyc:   SPEA398579:SPEA_3154-MONOMER
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 9566; Mature: 9566

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTKFDELMEFPASFPFKIVGDASDTLADRVVAVAQSLAPGDYAPTTKASSKGTYNSVT
CCCCCHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
IRITVTSKEHIEKLYTQLAAIEGVKRVL
EEEEECCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDTKFDELMEFPASFPFKIVGDASDTLADRVVAVAQSLAPGDYAPTTKASSKGTYNSVT
CCCCCHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
IRITVTSKEHIEKLYTQLAAIEGVKRVL
EEEEECCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA