| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157962862
Identifier: 157962862
GI number: 157962862
Start: 3734026
End: 3735138
Strand: Direct
Name: 157962862
Synonym: Spea_3044
Alternate gene names: NA
Gene position: 3734026-3735138 (Clockwise)
Preceding gene: 157962859
Following gene: 157962874
Centisome position: 72.16
GC content: 44.74
Gene sequence:
>1113_bases GTGTTCTATTTAAAAGGCCTAAAAAAGAGCCATCGAATAAGTCGCCTATTACAAATCATGGTAGCGATCGCATTATTCAT CGGTCTCGATCAGTTGTGGGAAACTAGCCTACTACAAGGACAGCAGCTTCTAAAGTCCCAAACAGAAAAGATGGCAAGAT TGCTGGTTCAACAAACAGCTTATGGTGCTGCACCGGCCCTACAGTTAGAGAATGATGAGCAGCTACAATGGCTTGCTCAA GCATTGGTGTTAGATCCTAAAGTGATGTCGGCCAGCATCTTCAGCGAAGATGGAGTTAGACTGTCGTTTGCCCAAAGCGT TATCGATGAAGAGTTAGAACCGAACTCTGAAGAGCTAACCAGTATCTTGGAGCAATACCCGCCCTATGTTGAGGCCGTCT CTCAAGATGGTAAGAACTTAGGTTACGTAGAGGTGCGTCTAGAACCTAAATACTTCTTTAATGAGATTAAAGAGGCGCAT CAAATCAACATGGAGCAGCAACAGATGATGCTGCTTATCGCAGGCCTGATTGGCATGTTGCTATCCCGCGCACTATCTTT CAAGCGTGCCGATTTCGATAGACGTAAAGCCAGGGTTAAACTACGCCGGTTACTAGCTAAAAAAAATGAAAAGGCTGAAG CAAAAGCCGCTAAAAAGCAGGCTGTAAAACAATCTTCAACTGTCAAATCAGAAGCGGATACCAGTCAAGCGGAAGAAGTA AAAACCGCTACTGATTCGGCGCCTAAAGCGAGTTCGGCAACAGTAAATGGGTCAATACCTGCAATGGAGGCTTCAGCCGT TGTTGCTTCAAACTTAGCCAACATTGATACAAAGGGTCCTGTGCCAGAGAAACCTGCCGCAAAGCCTAGAGCTAAAGCTA AAGCTAAGCCAAAAGTAAGCACTCTTAAAGCTGAAGCTAGTACCAAGCCGGTAGCGAAACCAAGAGCCAAACCTAAAGCA AAGGCTAAACCGAAAACCAGCGATGAAACTAAGCCTAGCGTAAAACCTAAAGCACCTGTAAAGCCAAAGGTAAAAGCCGT ACCCGAGTCAACTGCTACACAAAAAGTACAACCTAAAGCTGAATCAAAAGCAGATCCCAAAGATGAAGATTAA
Upstream 100 bases:
>100_bases TCGATTGACTCAAACTTTCCATTAGTTATGGCTCTCCAACTACCGAGCACAGACATAATCAATTATGATTAGGTGAGTAC ACAATAAATTAAGGGTTTCA
Downstream 100 bases:
>100_bases TTAACGAGTCATAAAACAAAAACGGACGCATAAGCGTCCGTTTTTTTTACACCGCAGCCAGTGACTGCAAAGCGTTACAA TTACAGAGTAATCGCAGCTT
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MFYLKGLKKSHRISRLLQIMVAIALFIGLDQLWETSLLQGQQLLKSQTEKMARLLVQQTAYGAAPALQLENDEQLQWLAQ ALVLDPKVMSASIFSEDGVRLSFAQSVIDEELEPNSEELTSILEQYPPYVEAVSQDGKNLGYVEVRLEPKYFFNEIKEAH QINMEQQQMMLLIAGLIGMLLSRALSFKRADFDRRKARVKLRRLLAKKNEKAEAKAAKKQAVKQSSTVKSEADTSQAEEV KTATDSAPKASSATVNGSIPAMEASAVVASNLANIDTKGPVPEKPAAKPRAKAKAKPKVSTLKAEASTKPVAKPRAKPKA KAKPKTSDETKPSVKPKAPVKPKVKAVPESTATQKVQPKAESKADPKDED
Sequences:
>Translated_370_residues MFYLKGLKKSHRISRLLQIMVAIALFIGLDQLWETSLLQGQQLLKSQTEKMARLLVQQTAYGAAPALQLENDEQLQWLAQ ALVLDPKVMSASIFSEDGVRLSFAQSVIDEELEPNSEELTSILEQYPPYVEAVSQDGKNLGYVEVRLEPKYFFNEIKEAH QINMEQQQMMLLIAGLIGMLLSRALSFKRADFDRRKARVKLRRLLAKKNEKAEAKAAKKQAVKQSSTVKSEADTSQAEEV KTATDSAPKASSATVNGSIPAMEASAVVASNLANIDTKGPVPEKPAAKPRAKAKAKPKVSTLKAEASTKPVAKPRAKPKA KAKPKTSDETKPSVKPKAPVKPKVKAVPESTATQKVQPKAESKADPKDED >Mature_370_residues MFYLKGLKKSHRISRLLQIMVAIALFIGLDQLWETSLLQGQQLLKSQTEKMARLLVQQTAYGAAPALQLENDEQLQWLAQ ALVLDPKVMSASIFSEDGVRLSFAQSVIDEELEPNSEELTSILEQYPPYVEAVSQDGKNLGYVEVRLEPKYFFNEIKEAH QINMEQQQMMLLIAGLIGMLLSRALSFKRADFDRRKARVKLRRLLAKKNEKAEAKAAKKQAVKQSSTVKSEADTSQAEEV KTATDSAPKASSATVNGSIPAMEASAVVASNLANIDTKGPVPEKPAAKPRAKAKAKPKVSTLKAEASTKPVAKPRAKPKA KAKPKTSDETKPSVKPKAPVKPKVKAVPESTATQKVQPKAESKADPKDED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40551; Mature: 40551
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: PS00588 FLAGELLA_BB_ROD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFYLKGLKKSHRISRLLQIMVAIALFIGLDQLWETSLLQGQQLLKSQTEKMARLLVQQTA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGAAPALQLENDEQLQWLAQALVLDPKVMSASIFSEDGVRLSFAQSVIDEELEPNSEELT CCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH SILEQYPPYVEAVSQDGKNLGYVEVRLEPKYFFNEIKEAHQINMEQQQMMLLIAGLIGML HHHHHCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LSRALSFKRADFDRRKARVKLRRLLAKKNEKAEAKAAKKQAVKQSSTVKSEADTSQAEEV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTATDSAPKASSATVNGSIPAMEASAVVASNLANIDTKGPVPEKPAAKPRAKAKAKPKVS HHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCHH TLKAEASTKPVAKPRAKPKAKAKPKTSDETKPSVKPKAPVKPKVKAVPESTATQKVQPKA HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCCCCH ESKADPKDED HCCCCCCCCC >Mature Secondary Structure MFYLKGLKKSHRISRLLQIMVAIALFIGLDQLWETSLLQGQQLLKSQTEKMARLLVQQTA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGAAPALQLENDEQLQWLAQALVLDPKVMSASIFSEDGVRLSFAQSVIDEELEPNSEELT CCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH SILEQYPPYVEAVSQDGKNLGYVEVRLEPKYFFNEIKEAHQINMEQQQMMLLIAGLIGML HHHHHCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LSRALSFKRADFDRRKARVKLRRLLAKKNEKAEAKAAKKQAVKQSSTVKSEADTSQAEEV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTATDSAPKASSATVNGSIPAMEASAVVASNLANIDTKGPVPEKPAAKPRAKAKAKPKVS HHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCHH TLKAEASTKPVAKPRAKPKAKAKPKTSDETKPSVKPKAPVKPKVKAVPESTATQKVQPKA HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCCCCH ESKADPKDED HCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA