| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157962847
Identifier: 157962847
GI number: 157962847
Start: 3714085
End: 3715350
Strand: Direct
Name: 157962847
Synonym: Spea_3029
Alternate gene names: NA
Gene position: 3714085-3715350 (Clockwise)
Preceding gene: 157962843
Following gene: 157962848
Centisome position: 71.78
GC content: 47.0
Gene sequence:
>1266_bases ATGCCTCAGCGGTTGTTTGATTGTTTTTCGCACTTTTGCTTATACTGTGCTCACAGCATTGATTATAAGAAAAACAATAT GGAACTCAGTAAAATAGCTAACATCAGCCTCGCTGCGCTCATCAGCTTACAGGCCTTTGACTCTATTGCTGCAGTTGAAT TCTTCGACCCTATTGATGGCTACTTTGATGCTGGCCAATACCTTGCCGAAAACGCCTATGGCTTTTTACCCGTCCCCACC ATTATAACTGAGCCGTCTGTGGGTAACGGCATTGCCGTGATGGGGATGTTTTTGCATGAAAGTGCCGAGCAACAACAGGC GCGCAAGGAGCTTGCCACTCACTCTATCGATGGCGGCGCGCAGCTATTAACACCAGGGATCTCGGTTGTCGGCGTTGGCG CAACGGATAACGGCACTAAGATGGCATTTGCGGGCCATAGGCAAACTTGGGCGCAAGATAGCGTTCGCTACCTCGTTGGT GGCGGTTACGGCGACATCAATATGAGCTTTTATAGCCAAAGTGATTTTGCACAAGATTTGTCATTAGATATGAATATGCA AGGCTTCGGTATTATTCAAAAGCTGCAATACCGCATTAACTCAAGCCCGCTGTTTCTTGGGGTATCGCAAAAATATCTTA GCTTAGATTTAAGCAGTCGCCGTGAGTTTGACAATATTCCACCTGAGCTTATAGATAGGCTAACCGATATCATAGATACA TCGCCTAAGGTGTCCTCTATTGGAGCGATTGTGGAATACGACAGCTTGAATAATTTCTTTCTCCCCACCAGCGGCTACAA TTATCTACTCGAATACGACTGGTTTAGCAAAGATATCGGTAGCGACTACAACTACCAAACGCTTAATGTTAAAGGGCTAA ACTATTGGCCTCTATCAAACAGCCTCACCTTAGGTGTAAAACTGCATTACCAAACCATCGACAGTGACGGCCGCCTGCCT ATTTTCACCTATCCCTTTATCGATCTACGCGGTATACCGAAGAACCGTTATCAGGGGCAAAATGTCGGCTCAGGTGAAGT GCAAATCATGTGGAAACTCAACCCTCGCTGGATGTTACTCTCATTCGCTGGCAGCGGACTCGCGGGTAAAAGCTCTAGTG ATATGTGGGATAGCGAACTGCAAAATGCCTATGGTGCTGGCTTTAGGTACACCATAGCTAGGCGCTATGGCTTACACATG GGAGTCGATGTGGCGCGGGGGCCTGAAGACACGGCTTTGTATATCAATGTCGGCAGCGGATTTTAA
Upstream 100 bases:
>100_bases TCGAATAACCTAATAATTGAAACAGCCATAATAACTCACCAGCAAAGCGGACAAGCTCATTCCCCAGCCCCTTACAGCTA TTTGTCTATCCTGCCGTATA
Downstream 100 bases:
>100_bases CGTACTAGAACGCCCCTCCCCTGCCATATAGTTTAGGCGAAACTTATATAGCGTGAAGTGGCTCACAACTCACCAAAAAA TCGAAAAACAAAACCGCGTA
Product: glyceraldehyde 3-phosphate dehydrogenase
Products: 3-phospho-D-glyceroyl phosphate; NADH; H+
Alternate protein names: Outer Membrane Protein/Protective Antigen OMA; Outer Membrane Protein; Surface Antigen
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MPQRLFDCFSHFCLYCAHSIDYKKNNMELSKIANISLAALISLQAFDSIAAVEFFDPIDGYFDAGQYLAENAYGFLPVPT IITEPSVGNGIAVMGMFLHESAEQQQARKELATHSIDGGAQLLTPGISVVGVGATDNGTKMAFAGHRQTWAQDSVRYLVG GGYGDINMSFYSQSDFAQDLSLDMNMQGFGIIQKLQYRINSSPLFLGVSQKYLSLDLSSRREFDNIPPELIDRLTDIIDT SPKVSSIGAIVEYDSLNNFFLPTSGYNYLLEYDWFSKDIGSDYNYQTLNVKGLNYWPLSNSLTLGVKLHYQTIDSDGRLP IFTYPFIDLRGIPKNRYQGQNVGSGEVQIMWKLNPRWMLLSFAGSGLAGKSSSDMWDSELQNAYGAGFRYTIARRYGLHM GVDVARGPEDTALYINVGSGF
Sequences:
>Translated_421_residues MPQRLFDCFSHFCLYCAHSIDYKKNNMELSKIANISLAALISLQAFDSIAAVEFFDPIDGYFDAGQYLAENAYGFLPVPT IITEPSVGNGIAVMGMFLHESAEQQQARKELATHSIDGGAQLLTPGISVVGVGATDNGTKMAFAGHRQTWAQDSVRYLVG GGYGDINMSFYSQSDFAQDLSLDMNMQGFGIIQKLQYRINSSPLFLGVSQKYLSLDLSSRREFDNIPPELIDRLTDIIDT SPKVSSIGAIVEYDSLNNFFLPTSGYNYLLEYDWFSKDIGSDYNYQTLNVKGLNYWPLSNSLTLGVKLHYQTIDSDGRLP IFTYPFIDLRGIPKNRYQGQNVGSGEVQIMWKLNPRWMLLSFAGSGLAGKSSSDMWDSELQNAYGAGFRYTIARRYGLHM GVDVARGPEDTALYINVGSGF >Mature_420_residues PQRLFDCFSHFCLYCAHSIDYKKNNMELSKIANISLAALISLQAFDSIAAVEFFDPIDGYFDAGQYLAENAYGFLPVPTI ITEPSVGNGIAVMGMFLHESAEQQQARKELATHSIDGGAQLLTPGISVVGVGATDNGTKMAFAGHRQTWAQDSVRYLVGG GYGDINMSFYSQSDFAQDLSLDMNMQGFGIIQKLQYRINSSPLFLGVSQKYLSLDLSSRREFDNIPPELIDRLTDIIDTS PKVSSIGAIVEYDSLNNFFLPTSGYNYLLEYDWFSKDIGSDYNYQTLNVKGLNYWPLSNSLTLGVKLHYQTIDSDGRLPI FTYPFIDLRGIPKNRYQGQNVGSGEVQIMWKLNPRWMLLSFAGSGLAGKSSSDMWDSELQNAYGAGFRYTIARRYGLHMG VDVARGPEDTALYINVGSGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.2.1.12
Molecular weight: Translated: 46775; Mature: 46644
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQRLFDCFSHFCLYCAHSIDYKKNNMELSKIANISLAALISLQAFDSIAAVEFFDPIDG CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC YFDAGQYLAENAYGFLPVPTIITEPSVGNGIAVMGMFLHESAEQQQARKELATHSIDGGA HHHCCHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QLLTPGISVVGVGATDNGTKMAFAGHRQTWAQDSVRYLVGGGYGDINMSFYSQSDFAQDL EEECCCCEEEEECCCCCCCEEEEECCCCHHHHCCEEEEEECCCCCEEEEEECCCCHHHHC SLDMNMQGFGIIQKLQYRINSSPLFLGVSQKYLSLDLSSRREFDNIPPELIDRLTDIIDT CCCCCCCCHHHHHHHHHHCCCCCEEEEECCEEEEEECHHCCCCCCCCHHHHHHHHHHHCC SPKVSSIGAIVEYDSLNNFFLPTSGYNYLLEYDWFSKDIGSDYNYQTLNVKGLNYWPLSN CCCHHHCCEEEEECCCCCEEECCCCCCEEEEECCCCHHHCCCCCEEEEEEECCEEECCCC SLTLGVKLHYQTIDSDGRLPIFTYPFIDLRGIPKNRYQGQNVGSGEVQIMWKLNPRWMLL CEEEEEEEEEEEECCCCCEEEEEECCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEE SFAGSGLAGKSSSDMWDSELQNAYGAGFRYTIARRYGLHMGVDVARGPEDTALYINVGSG EECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHCCCEECCEECCCCCCCEEEEECCCC F C >Mature Secondary Structure PQRLFDCFSHFCLYCAHSIDYKKNNMELSKIANISLAALISLQAFDSIAAVEFFDPIDG CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC YFDAGQYLAENAYGFLPVPTIITEPSVGNGIAVMGMFLHESAEQQQARKELATHSIDGGA HHHCCHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QLLTPGISVVGVGATDNGTKMAFAGHRQTWAQDSVRYLVGGGYGDINMSFYSQSDFAQDL EEECCCCEEEEECCCCCCCEEEEECCCCHHHHCCEEEEEECCCCCEEEEEECCCCHHHHC SLDMNMQGFGIIQKLQYRINSSPLFLGVSQKYLSLDLSSRREFDNIPPELIDRLTDIIDT CCCCCCCCHHHHHHHHHHCCCCCEEEEECCEEEEEECHHCCCCCCCCHHHHHHHHHHHCC SPKVSSIGAIVEYDSLNNFFLPTSGYNYLLEYDWFSKDIGSDYNYQTLNVKGLNYWPLSN CCCHHHCCEEEEECCCCCEEECCCCCCEEEEECCCCHHHCCCCCEEEEEEECCEEECCCC SLTLGVKLHYQTIDSDGRLPIFTYPFIDLRGIPKNRYQGQNVGSGEVQIMWKLNPRWMLL CEEEEEEEEEEEECCCCCEEEEEECCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEE SFAGSGLAGKSSSDMWDSELQNAYGAGFRYTIARRYGLHMGVDVARGPEDTALYINVGSG EECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHCCCEECCEECCCCCCCEEEEECCCC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-glyceraldehyde 3-phosphate; phosphate; NAD+
Specific reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA