Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is lutA [H]
Identifier: 157962814
GI number: 157962814
Start: 3671949
End: 3672692
Strand: Direct
Name: lutA [H]
Synonym: Spea_2996
Alternate gene names: 157962814
Gene position: 3671949-3672692 (Clockwise)
Preceding gene: 157962813
Following gene: 157962815
Centisome position: 70.96
GC content: 49.06
Gene sequence:
>744_bases ATGAAGATTGCACTTTTCATTCCGTGTCTAGTGAATCAGATGGTCCCAGAAGTGGGAATAGCCACCTTAGAATTATTAGA AAAGCTCGGACACCAAGTCATACTGCCAAAAGGCCAAACATGCTGCGGCCAGCCAATGACCAACTCAGGTTGCTATAACG AAGCCAAGAAGACCACTATGAAATTGCTTAATGCCTTTAAGGGCGTTGAGTGTGATGCCATAGTGTGCCCAGCCGCTTCA TGCCTTGTAGCCGCTAAAGAGAACTTTCACGAGTTTGATACAAGCTCTGAGGCTCAAGCTGTTATCGACAAGCTATATGA GTTAACTGAGTTTCTGCACGACGTCTCGCCTATTCCAGCATTTACTAAGCCTTTTCCCCACAAGATCAGTCTACAGATGA GCTGTCATGGCATTCGCATGCTAGATCTGGCCACCCCAAGTGAGCAGATGGGCCCACGGATGAACAAGTTCGAAGCTGTA CTTGCATCTATCCCCGAAATTGAAATTGTCTATCCAGAGCGCCGCGATGAATGCTGTGGTTTCGGTGGTACCTTCGCCCT AGATGAAGGCGCTGTCTCGGCTAAGATGGGCAAAGATAAAGCTCAGGCTCACGCCGAAACGGGCGCAGCTTATGCGGTTG GCTTCGATCCCTCTTGCCTGCTGCACATCGATGGTATGGTCAGACGACAGAAACTGCCAATTGAGACTCGTCATATCGCC CAAGTTATCAACGCAGCGCTTTAG
Upstream 100 bases:
>100_bases CCGCTTACTAAAAAGTCGGCTTTTTAAGCAGACTTTTTGCGGCTACTTTTTACAATTAGAAAGTCGCTAACAATGTCTGC AAAATAGAAGAGAAAACACA
Downstream 100 bases:
>100_bases GAGAAGATATGTCCACCTCTAATTCAGCGGTACACGCCCATAAGGCGGAGATCTTCTGTAAAGATGAATCCCGCGTTGAT TGGCACTCTAAAGCCCTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MKIALFIPCLVNQMVPEVGIATLELLEKLGHQVILPKGQTCCGQPMTNSGCYNEAKKTTMKLLNAFKGVECDAIVCPAAS CLVAAKENFHEFDTSSEAQAVIDKLYELTEFLHDVSPIPAFTKPFPHKISLQMSCHGIRMLDLATPSEQMGPRMNKFEAV LASIPEIEIVYPERRDECCGFGGTFALDEGAVSAKMGKDKAQAHAETGAAYAVGFDPSCLLHIDGMVRRQKLPIETRHIA QVINAAL
Sequences:
>Translated_247_residues MKIALFIPCLVNQMVPEVGIATLELLEKLGHQVILPKGQTCCGQPMTNSGCYNEAKKTTMKLLNAFKGVECDAIVCPAAS CLVAAKENFHEFDTSSEAQAVIDKLYELTEFLHDVSPIPAFTKPFPHKISLQMSCHGIRMLDLATPSEQMGPRMNKFEAV LASIPEIEIVYPERRDECCGFGGTFALDEGAVSAKMGKDKAQAHAETGAAYAVGFDPSCLLHIDGMVRRQKLPIETRHIA QVINAAL >Mature_247_residues MKIALFIPCLVNQMVPEVGIATLELLEKLGHQVILPKGQTCCGQPMTNSGCYNEAKKTTMKLLNAFKGVECDAIVCPAAS CLVAAKENFHEFDTSSEAQAVIDKLYELTEFLHDVSPIPAFTKPFPHKISLQMSCHGIRMLDLATPSEQMGPRMNKFEAV LASIPEIEIVYPERRDECCGFGGTFALDEGAVSAKMGKDKAQAHAETGAAYAVGFDPSCLLHIDGMVRRQKLPIETRHIA QVINAAL
Specific function: Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source [H]
COG id: COG0247
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lutA/ykgE family [H]
Homologues:
Organism=Escherichia coli, GI1786497, Length=247, Percent_Identity=29.9595141700405, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1788576, Length=232, Percent_Identity=23.2758620689655, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004017 - InterPro: IPR022822 [H]
Pfam domain/function: PF02754 CCG [H]
EC number: NA
Molecular weight: Translated: 26909; Mature: 26909
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 8.5 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 8.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIALFIPCLVNQMVPEVGIATLELLEKLGHQVILPKGQTCCGQPMTNSGCYNEAKKTTM CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH KLLNAFKGVECDAIVCPAASCLVAAKENFHEFDTSSEAQAVIDKLYELTEFLHDVSPIPA HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC FTKPFPHKISLQMSCHGIRMLDLATPSEQMGPRMNKFEAVLASIPEIEIVYPERRDECCG CCCCCCCEEEEEEECCCEEEEEECCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHCC FGGTFALDEGAVSAKMGKDKAQAHAETGAAYAVGFDPSCLLHIDGMVRRQKLPIETRHIA CCCCEEECCCCHHHHCCCHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHCCCCHHHHHH QVINAAL HHHHHCC >Mature Secondary Structure MKIALFIPCLVNQMVPEVGIATLELLEKLGHQVILPKGQTCCGQPMTNSGCYNEAKKTTM CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH KLLNAFKGVECDAIVCPAASCLVAAKENFHEFDTSSEAQAVIDKLYELTEFLHDVSPIPA HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC FTKPFPHKISLQMSCHGIRMLDLATPSEQMGPRMNKFEAVLASIPEIEIVYPERRDECCG CCCCCCCEEEEEEECCCEEEEEECCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHCC FGGTFALDEGAVSAKMGKDKAQAHAETGAAYAVGFDPSCLLHIDGMVRRQKLPIETRHIA CCCCEEECCCCHHHHCCCHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHCCCCHHHHHH QVINAAL HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]