| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is mvaB [H]
Identifier: 157962622
GI number: 157962622
Start: 3422068
End: 3422973
Strand: Direct
Name: mvaB [H]
Synonym: Spea_2802
Alternate gene names: 157962622
Gene position: 3422068-3422973 (Clockwise)
Preceding gene: 157962621
Following gene: 157962623
Centisome position: 66.13
GC content: 48.9
Gene sequence:
>906_bases ATGAAAATGACAAGCCCTTATCCTAAAAAGGTTAGCATTTTTGAAGTCGGTGCCCGTGACGGCCTGCAGAACGAAAAGCC TGTCACCACCCAAGATAAAATTATCTTGATTGAAGACTTAGCAGCCGCAGGCATAAAACGTATCGAAGCCGCTAGCTTTG TGTCACCAAAATGGGTGCCGCAGATGGCAGATTCAGCCGATGTGCTTCACGGTATTACTCGTAAAACGGGTGTGACCTAC AGCGCTTTAACGCCTAACTTAAAAGGCTTGGAACTTGCTCTTGACGCTGGCGCCGATGAAGTTGCTATCTTTGGCGCAGC TTCAGAGAGCTTTAGTCAGAAGAATATTAACTGCTCGATAGAAGAGTCCATTGAGCGCTTTATCCCAGTTATGGAGCAGG CTAAGGCCAGAAACATCCCTGTTCGTGGTTATGTTTCTTGCACTTTGGGTTGCCCTTACGAAGGAGACATCGCGGTCAGC GAAGTGGCTCGGGTGTCTGAATTACTTTACAAAATGGGCTGCTACGAGATCTCCCTTGGCGACACCATAGGCGTTGGCAC ACCGCTTAATGCCCGTAGAATGATTGAAGCGGTAGCAGAGCTTGTGCCCGTAGAAAAACTGGCACTGCATTTTCATGACA CTTATGGCCAAGCGCTCGCTAATATTCTGGCTTGCCTAGAAACCGGTGTCAGCGTTATCGACTCGTCAGTTGCAGGTCTT GGAGGCTGCCCCTATGCCAAAGGCGCATCGGGTAATTTGGCCACAGAAGACTTAGTTTATATGCTGCATGGACTTGGTAT CGAAACTGGTATCGACTTAACTAAACTGGTTAATGCTGGCAATAAGATCAGCCAAGCCCTAGGCCGTCCGTCGGGTTCAA AGGTGGCTAGAGCCCTCAGCGAATAA
Upstream 100 bases:
>100_bases TCGAGGCCGGTGAACTGGTTAGTGACGGTATGTTACTTGCCGAGGTCGTGGCTGAAGTTGAGGCGAAAGCTGAAATGCCG ACAGAAAAGGAAGAAGCAGG
Downstream 100 bases:
>100_bases AGAGCCCTCAGCGAATAAAGAGCCCTCAGCGAATAAATAGCGCTAAGTTAATAAAGAGCGATTAGCAAATAAGAAATAGA CTCTGAACCTAGGACCTAGG
Product: pyruvate carboxyltransferase
Products: NA
Alternate protein names: HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase [H]
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MKMTSPYPKKVSIFEVGARDGLQNEKPVTTQDKIILIEDLAAAGIKRIEAASFVSPKWVPQMADSADVLHGITRKTGVTY SALTPNLKGLELALDAGADEVAIFGAASESFSQKNINCSIEESIERFIPVMEQAKARNIPVRGYVSCTLGCPYEGDIAVS EVARVSELLYKMGCYEISLGDTIGVGTPLNARRMIEAVAELVPVEKLALHFHDTYGQALANILACLETGVSVIDSSVAGL GGCPYAKGASGNLATEDLVYMLHGLGIETGIDLTKLVNAGNKISQALGRPSGSKVARALSE
Sequences:
>Translated_301_residues MKMTSPYPKKVSIFEVGARDGLQNEKPVTTQDKIILIEDLAAAGIKRIEAASFVSPKWVPQMADSADVLHGITRKTGVTY SALTPNLKGLELALDAGADEVAIFGAASESFSQKNINCSIEESIERFIPVMEQAKARNIPVRGYVSCTLGCPYEGDIAVS EVARVSELLYKMGCYEISLGDTIGVGTPLNARRMIEAVAELVPVEKLALHFHDTYGQALANILACLETGVSVIDSSVAGL GGCPYAKGASGNLATEDLVYMLHGLGIETGIDLTKLVNAGNKISQALGRPSGSKVARALSE >Mature_301_residues MKMTSPYPKKVSIFEVGARDGLQNEKPVTTQDKIILIEDLAAAGIKRIEAASFVSPKWVPQMADSADVLHGITRKTGVTY SALTPNLKGLELALDAGADEVAIFGAASESFSQKNINCSIEESIERFIPVMEQAKARNIPVRGYVSCTLGCPYEGDIAVS EVARVSELLYKMGCYEISLGDTIGVGTPLNARRMIEAVAELVPVEKLALHFHDTYGQALANILACLETGVSVIDSSVAGL GGCPYAKGASGNLATEDLVYMLHGLGIETGIDLTKLVNAGNKISQALGRPSGSKVARALSE
Specific function: Involved in the catabolism of branched amino acids such as leucine (Probable) [H]
COG id: COG0119
COG function: function code E; Isopropylmalate/homocitrate/citramalate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HMG-CoA lyase family [H]
Homologues:
Organism=Homo sapiens, GI62198232, Length=292, Percent_Identity=65.4109589041096, Blast_Score=384, Evalue=1e-107, Organism=Homo sapiens, GI109150422, Length=292, Percent_Identity=59.9315068493151, Blast_Score=361, Evalue=1e-100, Organism=Homo sapiens, GI109150427, Length=292, Percent_Identity=59.9315068493151, Blast_Score=361, Evalue=1e-100, Organism=Homo sapiens, GI260654708, Length=136, Percent_Identity=69.1176470588235, Blast_Score=189, Evalue=2e-48, Organism=Caenorhabditis elegans, GI17510563, Length=292, Percent_Identity=52.3972602739726, Blast_Score=308, Evalue=3e-84, Organism=Drosophila melanogaster, GI24582381, Length=290, Percent_Identity=61.7241379310345, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000138 - InterPro: IPR000891 [H]
Pfam domain/function: PF00682 HMGL-like [H]
EC number: =4.1.3.4 [H]
Molecular weight: Translated: 31860; Mature: 31860
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS01062 HMG_COA_LYASE ; PS50991 PYR_CT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMTSPYPKKVSIFEVGARDGLQNEKPVTTQDKIILIEDLAAAGIKRIEAASFVSPKWVP CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCH QMADSADVLHGITRKTGVTYSALTPNLKGLELALDAGADEVAIFGAASESFSQKNINCSI HHCCHHHHHHHHHHHCCCEEHHCCCCCCCEEEEEECCCCCEEEEECCCHHHHCCCCCCCH EESIERFIPVMEQAKARNIPVRGYVSCTLGCPYEGDIAVSEVARVSELLYKMGCYEISLG HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECC DTIGVGTPLNARRMIEAVAELVPVEKLALHFHDTYGQALANILACLETGVSVIDSSVAGL CEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGCPYAKGASGNLATEDLVYMLHGLGIETGIDLTKLVNAGNKISQALGRPSGSKVARALS CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHHHHC E C >Mature Secondary Structure MKMTSPYPKKVSIFEVGARDGLQNEKPVTTQDKIILIEDLAAAGIKRIEAASFVSPKWVP CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCH QMADSADVLHGITRKTGVTYSALTPNLKGLELALDAGADEVAIFGAASESFSQKNINCSI HHCCHHHHHHHHHHHCCCEEHHCCCCCCCEEEEEECCCCCEEEEECCCHHHHCCCCCCCH EESIERFIPVMEQAKARNIPVRGYVSCTLGCPYEGDIAVSEVARVSELLYKMGCYEISLG HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECC DTIGVGTPLNARRMIEAVAELVPVEKLALHFHDTYGQALANILACLETGVSVIDSSVAGL CEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGCPYAKGASGNLATEDLVYMLHGLGIETGIDLTKLVNAGNKISQALGRPSGSKVARALS CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHHHHC E C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2687236; 2656635; 1637819 [H]