Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is 157962530
Identifier: 157962530
GI number: 157962530
Start: 3309533
End: 3310066
Strand: Reverse
Name: 157962530
Synonym: Spea_2709
Alternate gene names: NA
Gene position: 3310066-3309533 (Counterclockwise)
Preceding gene: 157962531
Following gene: 157962529
Centisome position: 63.97
GC content: 41.57
Gene sequence:
>534_bases ATGACTTATACAAAAGTTGTTTTTTTCGCATTTTTGTTATGTGTGACAAATGATGCCTTGGCTCTTGATAGCTCTGCTTC TGGCAATCAGCGAGAGTTCCATGTGGACACGCAGATAGAGCTGGATAAGTTTTATGACCGAGAGATCATTAAATTTGAGT TTGTCAAAAAGAACTGGCAGCTAGAGTTCGATGGCCGTAATTACAAATTTAATGATATTTCAGATGTACTGCAATTAGAA ACCTCGATTGGTAAGAGTGATCCGCTCAATAGCTACAGCCTTAATTTGATTGAAAACAGCTCCGCTTGTTATGACGTCAA TGGCGTGGCGACTGACAGCAAAGACTTAGTGTCTGTCAGCGTCGATGGTGAATCGATTAATAAGGGAGAGGGGCTAGATA GTTTGGAGTTTGACGGGGTTAATCGTGTGGGAAAGTACAGCAACTTTGACGTTGAACTTAAGTTTGCGCCAGTCAGCGTA AAAGATGACTACTGCGAGGGTATGATCAAGATGAGCATAGAGTTAGCCATATGA
Upstream 100 bases:
>100_bases AGAGCTAAACCCTGGGCAAAATATTGAGGTGCATACCGTAATCAATTCAGCTAAAGCTATCTAAGCCCCACTTATTCCTC AGAACTATCAAGAGCCAATT
Downstream 100 bases:
>100_bases GATACAACAAACTAGCCCTTTCAATCCTATTTGGTCTGTCTTGTACCCTTAACCCTCAGCTGTCTTTACCTAGCTATGCA TCGGTAAAAACGGAAGGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MTYTKVVFFAFLLCVTNDALALDSSASGNQREFHVDTQIELDKFYDREIIKFEFVKKNWQLEFDGRNYKFNDISDVLQLE TSIGKSDPLNSYSLNLIENSSACYDVNGVATDSKDLVSVSVDGESINKGEGLDSLEFDGVNRVGKYSNFDVELKFAPVSV KDDYCEGMIKMSIELAI
Sequences:
>Translated_177_residues MTYTKVVFFAFLLCVTNDALALDSSASGNQREFHVDTQIELDKFYDREIIKFEFVKKNWQLEFDGRNYKFNDISDVLQLE TSIGKSDPLNSYSLNLIENSSACYDVNGVATDSKDLVSVSVDGESINKGEGLDSLEFDGVNRVGKYSNFDVELKFAPVSV KDDYCEGMIKMSIELAI >Mature_176_residues TYTKVVFFAFLLCVTNDALALDSSASGNQREFHVDTQIELDKFYDREIIKFEFVKKNWQLEFDGRNYKFNDISDVLQLET SIGKSDPLNSYSLNLIENSSACYDVNGVATDSKDLVSVSVDGESINKGEGLDSLEFDGVNRVGKYSNFDVELKFAPVSVK DDYCEGMIKMSIELAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19911; Mature: 19780
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTKVVFFAFLLCVTNDALALDSSASGNQREFHVDTQIELDKFYDREIIKFEFVKKNWQ CCHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCEEEECHHCCCEEEEEEEEECCEE LEFDGRNYKFNDISDVLQLETSIGKSDPLNSYSLNLIENSSACYDVNGVATDSKDLVSVS EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCEEEEE VDGESINKGEGLDSLEFDGVNRVGKYSNFDVELKFAPVSVKDDYCEGMIKMSIELAI ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHCCEEEEEEEEEC >Mature Secondary Structure TYTKVVFFAFLLCVTNDALALDSSASGNQREFHVDTQIELDKFYDREIIKFEFVKKNWQ CHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCEEEECHHCCCEEEEEEEEECCEE LEFDGRNYKFNDISDVLQLETSIGKSDPLNSYSLNLIENSSACYDVNGVATDSKDLVSVS EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCEEEEE VDGESINKGEGLDSLEFDGVNRVGKYSNFDVELKFAPVSVKDDYCEGMIKMSIELAI ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA