| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is btuB [H]
Identifier: 157962474
GI number: 157962474
Start: 3229718
End: 3232564
Strand: Reverse
Name: btuB [H]
Synonym: Spea_2653
Alternate gene names: 157962474
Gene position: 3232564-3229718 (Counterclockwise)
Preceding gene: 157962475
Following gene: 157962473
Centisome position: 62.47
GC content: 43.27
Gene sequence:
>2847_bases ATGTATAAGAATAACTTTCTAACAAATTCAGTGCGTCTAGCGCTTGTTAGTGGTGCTATGACTGCTGCTTTTACCGCACC AGCAGTTTATGCAGCCGATGAAGAAGTAGAACGTATCGAAGTTACAGGTTCTCGCATTAAGCGAACAGATATGGAGACCT CTTCTCCAATTCATGTAATGGATGCTGAGCAGATAAAAATGAGTGGTTTTACCAATGTCGAAGACATTCTAAACCAACTT CCACAACTAGAAACTGCAAGTAACGCTTTCCAAGCTAACGGCGCATCAGGTACCGCTTCACTAGATTTACGTGGTCTAGG TAGTAACCGTACACTAGTACTTATCAATGGTCGCAGAATGCAAGCGGGTAGTATTACCTCACAAAGTGCCGATATTAACC AAATTCCAGCTTCGCTAATTAAGCGTGTCGAAGTGATGACAGGTGGTGCTGCAGCCGTATACGGTGCTGACGCAGTAGCG GGTGTTGTGAACTTCATCATGGATAGCGATTTCGATGGCATCTCAATCAATGTTGGAGCCTCTGGTTACCAGCATGATAA CGATAATGGCTACATTCAAGGCCTTATGGATGAGAAAGGCTTCGAATACCCTTCAGGCAATACAGATATCGATGGTAAGA CTTATAATATCGATTTAGCAATTGGTAGTGATTTTGCCGACGGTAAGGGTCACGCTGTAGCATATGCTGTTTGGCGTCGT AACGATGAGCTACTTCAAGGTGAGCGAGATTATTCTTCTTGTGCACTAAATGGTTCACAGTCTGCTTGTGGTGGTTCTGC TAACACGCCGCTAGCTCACTTCGATATCTACCCAGTAGTTGATGGTGAAGTTGATTACAAACAAAACTTTTGGGGTTACA CCGATCCAAATGGTAACGGTTTTAAGCCAGATGATGGCTACCGTTATAACTATGCACCAGTAAACCACTTTATGCGTCCA AATGAGCGTATTTCTCTAGGTTCATTTATGAACTACGAAATTAACGATCATGCGCGTCCATATGTAGAGCTGTCTTTCAT GCAGAACCGCACTGCTGGTCAGATTGCTGAATCAGGTACTTTCTTCAACGAAGAGTATTTGATGGATTATAACAACCCAT TGCTAACTGAGCTTCAAAAGCAGCAGTTACAAGCTGAATTCAATCAAACAGGCGATGATCAATTCGTAGCCTATATCGGT AAGCGTAATGTCGAAGGTGGTGCGCGTGCTAACAATCTAGAGCACAACTCATACCGTATCCTTACTGGTATGGAAGGTGA CATCAATGATAACTGGACTTACGATGTAAACTTCAACTATTCAGCGACATCATCTTCATCTGTGTATCAGAATGACCTAC TTGCACCAAAAATTGCACCAAGAGTTGGTGCGGTTGATACTGAGTGTGTAGAAGCCGATGGCTGCCTATATTATAACGTT TTTGAGCCAGGCGGAGTAACCGCAGAGCAAGCTGCACAGCTAGCTGGTGTTGGTATCCAAACAGGTCTAGTAACGCAAAC TATTTACAGTGGTTATGTGACAGGTGATATCGGTGTGACAATTCCTTCTGCATCAGATCCAATTGCGATGGTATTTGGTT TTGAGCGTCGTGAGCAGGATTATGAAAGAATTTCAGATACCGTATATGAAGAAGGACAACTACTAGGTCAAGGTGGTCCA AACACTAGTCTTACTGGTGAGATTGATGTAAACGAACTTTATACAGAATTCCAAATCCCTATACTGGACAACTTAGCATT TGATTTAGGTGCTCGTTATTCTGATTATTCAACTTCTGGTGGTAACTGGACTTATAAAGTCGGCGCTGATTACACTTTGG CAGATGCTTATATGTTCCGCGCAAGTTTCAACCGTGCGGTACGTGCACCAAATGTGGCTGAATTATTTGACTCACAAAGT ATTGGCCTATGGTCGGGTGCAGATGGTTGTGCCACTGATGAAGATGGTAATATCGCATTTAATGAAGCACAGTGTGCTAA TACTGGCGTAACTATGGATCAGTATGGCAACATCGGTTCATCTCCTGCGGGACAGTACAATGAGTTCGCTGGTGGTAACC CAGAGCTAGACCCTGAAGAAGCTGAAACAATTACTTTAGGCTTAGTCGCTAACCCATTAGATAACTTCAGTTTCTCACTT GATTATTTCAACATTGAGATGGAAAACGTGATCAGTACTGTTGGTGCTGAGCGAATTCTAAATATCTGTGCTGAAACAGG TGATAGCGCATTCTGTCAAAATGTTCAACGTAGTGCCTCTGGTAGCCTATGGTTAGGCCAAAGCGGTTACGTTGTAAACC TTAGTGACAACATTGGTGGTCGTTCTTGGGAAGGTATTGATGCTGCAGCTCAATACAACATCGAACTAGGCAGCGGTGAC CTTTCTTTCGACATCATTGGTTCATACGCAATGAAGAAAGAAGTCCAACCAATCAAAGGTAACGATGCCCTAGCATATGA TTGTGCTGGTAACATCAGCTCAGATTGTTTTGCGACTCCTGAGTGGAGACATACTTTTACAGCTAAGTACACTGCGGCTG ATTGGGTGTTAGCAGCTAAATGGCGTTATTACGGTGAGGTCTCATATGATGGCACCGCTGATACACGTCTAGCAGAGCAA GGTGGTATCGACGCTTACAACTACTTCGATCTAAACGGTACTTACGTATTTACTGACTACATGTCTGTAACTGCGGGTAT GAACAACCTATTTGATAAAGAGCCGCCAATGGTTGGCAACTCACTTTCAACTAATGCGAACACTATCGCTGGTTTCTATG ACACGCTTGGTCGTTTCATGCACGTAAGTGTTAACCTTAAGTTCTAA
Upstream 100 bases:
>100_bases TTCTGGTGTGTTTTTATTTGTGTGCAAATTCACGCTCACGTAACTTTCTGTTAATGAGTGTGTTGCTAAAAAAATAAAAA AGAGTCCAGGGAGATTTACA
Downstream 100 bases:
>100_bases GGTTAGTTATAAAATAAGTTAATAAAATAGTGTTTAAAAGCCACCCTCTGGGTGGCTTTTTTATTGCAGCAACAAAGCAA AGTTTGCTTGGATTATAGGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 948; Mature: 948
Protein sequence:
>948_residues MYKNNFLTNSVRLALVSGAMTAAFTAPAVYAADEEVERIEVTGSRIKRTDMETSSPIHVMDAEQIKMSGFTNVEDILNQL PQLETASNAFQANGASGTASLDLRGLGSNRTLVLINGRRMQAGSITSQSADINQIPASLIKRVEVMTGGAAAVYGADAVA GVVNFIMDSDFDGISINVGASGYQHDNDNGYIQGLMDEKGFEYPSGNTDIDGKTYNIDLAIGSDFADGKGHAVAYAVWRR NDELLQGERDYSSCALNGSQSACGGSANTPLAHFDIYPVVDGEVDYKQNFWGYTDPNGNGFKPDDGYRYNYAPVNHFMRP NERISLGSFMNYEINDHARPYVELSFMQNRTAGQIAESGTFFNEEYLMDYNNPLLTELQKQQLQAEFNQTGDDQFVAYIG KRNVEGGARANNLEHNSYRILTGMEGDINDNWTYDVNFNYSATSSSSVYQNDLLAPKIAPRVGAVDTECVEADGCLYYNV FEPGGVTAEQAAQLAGVGIQTGLVTQTIYSGYVTGDIGVTIPSASDPIAMVFGFERREQDYERISDTVYEEGQLLGQGGP NTSLTGEIDVNELYTEFQIPILDNLAFDLGARYSDYSTSGGNWTYKVGADYTLADAYMFRASFNRAVRAPNVAELFDSQS IGLWSGADGCATDEDGNIAFNEAQCANTGVTMDQYGNIGSSPAGQYNEFAGGNPELDPEEAETITLGLVANPLDNFSFSL DYFNIEMENVISTVGAERILNICAETGDSAFCQNVQRSASGSLWLGQSGYVVNLSDNIGGRSWEGIDAAAQYNIELGSGD LSFDIIGSYAMKKEVQPIKGNDALAYDCAGNISSDCFATPEWRHTFTAKYTAADWVLAAKWRYYGEVSYDGTADTRLAEQ GGIDAYNYFDLNGTYVFTDYMSVTAGMNNLFDKEPPMVGNSLSTNANTIAGFYDTLGRFMHVSVNLKF
Sequences:
>Translated_948_residues MYKNNFLTNSVRLALVSGAMTAAFTAPAVYAADEEVERIEVTGSRIKRTDMETSSPIHVMDAEQIKMSGFTNVEDILNQL PQLETASNAFQANGASGTASLDLRGLGSNRTLVLINGRRMQAGSITSQSADINQIPASLIKRVEVMTGGAAAVYGADAVA GVVNFIMDSDFDGISINVGASGYQHDNDNGYIQGLMDEKGFEYPSGNTDIDGKTYNIDLAIGSDFADGKGHAVAYAVWRR NDELLQGERDYSSCALNGSQSACGGSANTPLAHFDIYPVVDGEVDYKQNFWGYTDPNGNGFKPDDGYRYNYAPVNHFMRP NERISLGSFMNYEINDHARPYVELSFMQNRTAGQIAESGTFFNEEYLMDYNNPLLTELQKQQLQAEFNQTGDDQFVAYIG KRNVEGGARANNLEHNSYRILTGMEGDINDNWTYDVNFNYSATSSSSVYQNDLLAPKIAPRVGAVDTECVEADGCLYYNV FEPGGVTAEQAAQLAGVGIQTGLVTQTIYSGYVTGDIGVTIPSASDPIAMVFGFERREQDYERISDTVYEEGQLLGQGGP NTSLTGEIDVNELYTEFQIPILDNLAFDLGARYSDYSTSGGNWTYKVGADYTLADAYMFRASFNRAVRAPNVAELFDSQS IGLWSGADGCATDEDGNIAFNEAQCANTGVTMDQYGNIGSSPAGQYNEFAGGNPELDPEEAETITLGLVANPLDNFSFSL DYFNIEMENVISTVGAERILNICAETGDSAFCQNVQRSASGSLWLGQSGYVVNLSDNIGGRSWEGIDAAAQYNIELGSGD LSFDIIGSYAMKKEVQPIKGNDALAYDCAGNISSDCFATPEWRHTFTAKYTAADWVLAAKWRYYGEVSYDGTADTRLAEQ GGIDAYNYFDLNGTYVFTDYMSVTAGMNNLFDKEPPMVGNSLSTNANTIAGFYDTLGRFMHVSVNLKF >Mature_948_residues MYKNNFLTNSVRLALVSGAMTAAFTAPAVYAADEEVERIEVTGSRIKRTDMETSSPIHVMDAEQIKMSGFTNVEDILNQL PQLETASNAFQANGASGTASLDLRGLGSNRTLVLINGRRMQAGSITSQSADINQIPASLIKRVEVMTGGAAAVYGADAVA GVVNFIMDSDFDGISINVGASGYQHDNDNGYIQGLMDEKGFEYPSGNTDIDGKTYNIDLAIGSDFADGKGHAVAYAVWRR NDELLQGERDYSSCALNGSQSACGGSANTPLAHFDIYPVVDGEVDYKQNFWGYTDPNGNGFKPDDGYRYNYAPVNHFMRP NERISLGSFMNYEINDHARPYVELSFMQNRTAGQIAESGTFFNEEYLMDYNNPLLTELQKQQLQAEFNQTGDDQFVAYIG KRNVEGGARANNLEHNSYRILTGMEGDINDNWTYDVNFNYSATSSSSVYQNDLLAPKIAPRVGAVDTECVEADGCLYYNV FEPGGVTAEQAAQLAGVGIQTGLVTQTIYSGYVTGDIGVTIPSASDPIAMVFGFERREQDYERISDTVYEEGQLLGQGGP NTSLTGEIDVNELYTEFQIPILDNLAFDLGARYSDYSTSGGNWTYKVGADYTLADAYMFRASFNRAVRAPNVAELFDSQS IGLWSGADGCATDEDGNIAFNEAQCANTGVTMDQYGNIGSSPAGQYNEFAGGNPELDPEEAETITLGLVANPLDNFSFSL DYFNIEMENVISTVGAERILNICAETGDSAFCQNVQRSASGSLWLGQSGYVVNLSDNIGGRSWEGIDAAAQYNIELGSGD LSFDIIGSYAMKKEVQPIKGNDALAYDCAGNISSDCFATPEWRHTFTAKYTAADWVLAAKWRYYGEVSYDGTADTRLAEQ GGIDAYNYFDLNGTYVFTDYMSVTAGMNNLFDKEPPMVGNSLSTNANTIAGFYDTLGRFMHVSVNLKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=168, Percent_Identity=32.7380952380952, Blast_Score=93, Evalue=7e-20, Organism=Escherichia coli, GI1788478, Length=158, Percent_Identity=30.379746835443, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 103129; Mature: 103129
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKNNFLTNSVRLALVSGAMTAAFTAPAVYAADEEVERIEVTGSRIKRTDMETSSPIHVM CCCCCEECCCEEEEEEECCHHHHHCCCEEEECCCCCEEEEECCCCEEECCCCCCCCEEEE DAEQIKMSGFTNVEDILNQLPQLETASNAFQANGASGTASLDLRGLGSNRTLVLINGRRM CHHHEEECCCCCHHHHHHHCCCCCCCCCHHCCCCCCCEEEEEEEECCCCCEEEEECCCEE QAGSITSQSADINQIPASLIKRVEVMTGGAAAVYGADAVAGVVNFIMDSDFDGISINVGA ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCEEEEECC SGYQHDNDNGYIQGLMDEKGFEYPSGNTDIDGKTYNIDLAIGSDFADGKGHAVAYAVWRR CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEC NDELLQGERDYSSCALNGSQSACGGSANTPLAHFDIYPVVDGEVDYKQNFWGYTDPNGNG CCHHHCCCCCCHHEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC FKPDDGYRYNYAPVNHFMRPNERISLGSFMNYEINDHARPYVELSFMQNRTAGQIAESGT CCCCCCCEEECCCHHHHCCCCCCEECCCEEEEEECCCCCCEEEEEEECCCCCCCHHHCCC FFNEEYLMDYNNPLLTELQKQQLQAEFNQTGDDQFVAYIGKRNVEGGARANNLEHNSYRI EECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE LTGMEGDINDNWTYDVNFNYSATSSSSVYQNDLLAPKIAPRVGAVDTECVEADGCLYYNV EECCCCCCCCCEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCEEEEEE FEPGGVTAEQAAQLAGVGIQTGLVTQTIYSGYVTGDIGVTIPSASDPIAMVFGFERREQD ECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEECCEEEEECCCCCCEEEEEECHHHHHH YERISDTVYEEGQLLGQGGPNTSLTGEIDVNELYTEFQIPILDNLAFDLGARYSDYSTSG HHHHHHHHHHCCEEEECCCCCCCEEEEEEHHHHHHEECCCHHHHHHHHHCCCCCCCCCCC GNWTYKVGADYTLADAYMFRASFNRAVRAPNVAELFDSQSIGLWSGADGCATDEDGNIAF CCEEEEECCCEEHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCCCCCCCEEE NEAQCANTGVTMDQYGNIGSSPAGQYNEFAGGNPELDPEEAETITLGLVANPLDNFSFSL CCCCCCCCCCCHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE DYFNIEMENVISTVGAERILNICAETGDSAFCQNVQRSASGSLWLGQSGYVVNLSDNIGG EEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCEEEEECCCCCC RSWEGIDAAAQYNIELGSGDLSFDIIGSYAMKKEVQPIKGNDALAYDCAGNISSDCFATP CCCCCCCCEEEEEEEECCCCEEEEEECCHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCC EWRHTFTAKYTAADWVLAAKWRYYGEVSYDGTADTRLAEQGGIDAYNYFDLNGTYVFTDY CCCEEEEEEEECCCEEEEEEEEEEEEEECCCCCCCHHHHHCCCCEEEEEECCCCEEEEEH MSVTAGMNNLFDKEPPMVGNSLSTNANTIAGFYDTLGRFMHVSVNLKF HHHHHCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEC >Mature Secondary Structure MYKNNFLTNSVRLALVSGAMTAAFTAPAVYAADEEVERIEVTGSRIKRTDMETSSPIHVM CCCCCEECCCEEEEEEECCHHHHHCCCEEEECCCCCEEEEECCCCEEECCCCCCCCEEEE DAEQIKMSGFTNVEDILNQLPQLETASNAFQANGASGTASLDLRGLGSNRTLVLINGRRM CHHHEEECCCCCHHHHHHHCCCCCCCCCHHCCCCCCCEEEEEEEECCCCCEEEEECCCEE QAGSITSQSADINQIPASLIKRVEVMTGGAAAVYGADAVAGVVNFIMDSDFDGISINVGA ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCEEEEECC SGYQHDNDNGYIQGLMDEKGFEYPSGNTDIDGKTYNIDLAIGSDFADGKGHAVAYAVWRR CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEC NDELLQGERDYSSCALNGSQSACGGSANTPLAHFDIYPVVDGEVDYKQNFWGYTDPNGNG CCHHHCCCCCCHHEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC FKPDDGYRYNYAPVNHFMRPNERISLGSFMNYEINDHARPYVELSFMQNRTAGQIAESGT CCCCCCCEEECCCHHHHCCCCCCEECCCEEEEEECCCCCCEEEEEEECCCCCCCHHHCCC FFNEEYLMDYNNPLLTELQKQQLQAEFNQTGDDQFVAYIGKRNVEGGARANNLEHNSYRI EECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE LTGMEGDINDNWTYDVNFNYSATSSSSVYQNDLLAPKIAPRVGAVDTECVEADGCLYYNV EECCCCCCCCCEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCEEEEEE FEPGGVTAEQAAQLAGVGIQTGLVTQTIYSGYVTGDIGVTIPSASDPIAMVFGFERREQD ECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEECCEEEEECCCCCCEEEEEECHHHHHH YERISDTVYEEGQLLGQGGPNTSLTGEIDVNELYTEFQIPILDNLAFDLGARYSDYSTSG HHHHHHHHHHCCEEEECCCCCCCEEEEEEHHHHHHEECCCHHHHHHHHHCCCCCCCCCCC GNWTYKVGADYTLADAYMFRASFNRAVRAPNVAELFDSQSIGLWSGADGCATDEDGNIAF CCEEEEECCCEEHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCCCCCCCEEE NEAQCANTGVTMDQYGNIGSSPAGQYNEFAGGNPELDPEEAETITLGLVANPLDNFSFSL CCCCCCCCCCCHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE DYFNIEMENVISTVGAERILNICAETGDSAFCQNVQRSASGSLWLGQSGYVVNLSDNIGG EEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCEEEEECCCCCC RSWEGIDAAAQYNIELGSGDLSFDIIGSYAMKKEVQPIKGNDALAYDCAGNISSDCFATP CCCCCCCCEEEEEEEECCCCEEEEEECCHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCC EWRHTFTAKYTAADWVLAAKWRYYGEVSYDGTADTRLAEQGGIDAYNYFDLNGTYVFTDY CCCEEEEEEEECCCEEEEEEEEEEEEEECCCCCCCHHHHHCCCCEEEEEECCCCEEEEEH MSVTAGMNNLFDKEPPMVGNSLSTNANTIAGFYDTLGRFMHVSVNLKF HHHHHCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]