Click here to switch to the map view.

The map label for this gene is ybcJ [H]

Identifier: 157962463

GI number: 157962463

Start: 3220219

End: 3220449

Strand: Reverse

Name: ybcJ [H]

Synonym: Spea_2642

Alternate gene names: 157962463

Gene position: 3220449-3220219 (Counterclockwise)

Preceding gene: 157962464

Following gene: 157962462

Centisome position: 62.24

GC content: 43.29

Gene sequence:

>231_bases
GTGAGTGCAGATACTCCAACGCTGACACTAAAGTCAGGCGAAGAATACATCGAATTATACAAAGTATTGAAAGTCCAAGG
AATGATGAGTGCAGGTGGCGAAGCCAAGCACGTTATTTCTGAAGGGCAAGTGACCGTTAACGGTGAAGTTGAAACACGCA
AGCGCAAGAAAGTGATTGCTGGTGAAGTGGTTAGTTTTAACGGCGAAAGCGTTAAAATTATTGCTGAGTAA

Upstream 100 bases:

>100_bases
TATGGGCTTTTGGCTGCACAAAGGTGTTAGAAACCATGCACTCGCATGATAAATTGAGTGCTATAATGGCGTCAGTTCTA
GTTATTTAAGGCGAAATACA

Downstream 100 bases:

>100_bases
CTAAGAAGAGAGGATAGACATGCAGTTTCCAGATGATGACAATGGCAAAATGCTTGAAGCGATGGCTGATGCCGGTATCG
ACTTATCAGCAGCTCTCGAT

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSADTPTLTLKSGEEYIELYKVLKVQGMMSAGGEAKHVISEGQVTVNGEVETRKRKKVIAGEVVSFNGESVKIIAE

Sequences:

>Translated_76_residues
MSADTPTLTLKSGEEYIELYKVLKVQGMMSAGGEAKHVISEGQVTVNGEVETRKRKKVIAGEVVSFNGESVKIIAE
>Mature_75_residues
SADTPTLTLKSGEEYIELYKVLKVQGMMSAGGEAKHVISEGQVTVNGEVETRKRKKVIAGEVVSFNGESVKIIAE

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=60, Percent_Identity=51.6666666666667, Blast_Score=68, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8198; Mature: 8066

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADTPTLTLKSGEEYIELYKVLKVQGMMSAGGEAKHVISEGQVTVNGEVETRKRKKVIA
CCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCHHHEEE
GEVVSFNGESVKIIAE
CEEEEECCCEEEEEEC
>Mature Secondary Structure 
SADTPTLTLKSGEEYIELYKVLKVQGMMSAGGEAKHVISEGQVTVNGEVETRKRKKVIA
CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCHHHEEE
GEVVSFNGESVKIIAE
CEEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]