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The map label for this gene is nrdD [H]

Identifier: 157962440

GI number: 157962440

Start: 3187913

End: 3190030

Strand: Reverse

Name: nrdD [H]

Synonym: Spea_2619

Alternate gene names: 157962440

Gene position: 3190030-3187913 (Counterclockwise)

Preceding gene: 157962441

Following gene: 157962439

Centisome position: 61.65

GC content: 45.89

Gene sequence:

>2118_bases
ATGCCAGTGGTTATTAAACGGGATGGTTACCGTACGCCTTTTGACGAAACAAGGATTAAAGATGCCGTGATAGCAGCTGC
TAACTCGGTAGGTATTGAGTGCGCTGAATATGCCCAACAAGTTGCAGAAAAAGTAAGTCAAACTGTCGCTGAATTAGAGG
AAGTGAACATTCACGATCTACAAGATTCAGTTGAAAACTTGTTGATGGAAGGCCCACATAAATCATTAGCACGTGTCTAC
ATTGAATACCGTCACGATCGTGACGTTAAGCGCGAAGTCAGCAGCCGCTTAAACAAAGAGATCCGTGGCCTGGTTGAGCA
AAGCAATGCAGCTTTGTTAAACGAGAACGCCAACAAGGACTCTAAGGTTATTCCGACTCAGCGAGATCTGTTAGCAGGTA
TCGTGGCTAAGCATTATGCTAAGTGCCACATCTTACCAAAAGATGTCGTTGCTGCTCACGAGTCTGGTGAGATCCATTAC
CATGACTTAGATTACGCGCCATTCTTCCCAATGTTTAACTGTATGCTTATCGACTTAAGCGGCATGTTGACCCAAGGCTT
TAAGATGGGTAATGCCGAGATTGAAACACCAAAATCAATCTCTACCGCGACGGCCGTAACGGCGCAAATTATTGCTCAAG
TGGCGAGCCATATCTATGGCGGTACCACCATCAACCGTATCGACGAAGTGCTAGCACCGTTTGTTGCCAAGAGCTATGAC
AAGCATTACCAAGTGGCACTGACTTGGGGCATTACCGATGCCAAAGCTTTCGCGACAGCGCAAACCGAGAAAGAGTGTCA
CGATGCATTCCAGTCACTCGAATATGAAGTGAACACCCTGCATACTGCGAATGGCCAAACGCCATTTGTGACATTTGGAT
TTGGTTTAGGTACCTCTTGGGAATCGCGCTTAATTCAACAATCAATGATGAAAGTACGTATCGCAGGTCTTGGTAAGAAT
CGTAAGACTGCGGTATTCCCTAAGCTAGTATTTGCTATCCGTGATGGTATTAACCATAAAACCGGTGATTGTAACTACGA
CATCAAGCAGTTAGCACTTAAGTGTGCAACGACTCGTATGTACCCTGATATTCTTAACTACGAACAAGTAGAAAGAGTCA
CAGGCTCATTTAAGACGCCTATGGGTTGTCGTAGCTTCTTAGGTACTTTCGAGCAAGACGGTGAGCTAGTACACGAAGGC
CGTAACAATCTAGGTGTTGTCAGTCTTAACTTGCCACGTATTGCCCTAGAAGCTAAGGGTGATGAGGCAGAGTTCTACCG
CATCTTAGATCAACGTCTATTGATTGCTCGTAAGGGCTTAGATACACGTATCGCACGTCTAGAAGGGGTTAAAGCTCGCG
TAGCGCCAATTCTTTATATGGAAGGGGCTTGTGGTGTACGTCTGCGCGCCGATGATGAGATTTCTGAGATCTTTAAGAAT
GGCCGCGCGTCAATTTCACTGGGTTATATTGGCCTTCATGAAACTATCAATGCACTCTATGGCACCGAAGAGCACGTTTA
CGACAGCGAAATGCTGCGTGAAAAAGCTATCGAAGTGATTAAGTACATGAAGCGAGCAACTGAAAACTGGAAGAAAGAGT
CTGGTTATGCATTTAGCTTGTATAGCACGCCAAGTGAGAACTTGTGCAGCCGTTTTTGCGCCCTAGACACTAAAGTATTC
GGTGTTGTTGATGGCGTAACGGCTAAAGGTTACTACACCAACAGCTTCCACTTGGATGTTGAGAAACAAGTTAACCCTTA
CGACAAGATTGATTTTGAACAGCCATACCCAGAGTTAGCTAACGGTGGCTTCATCTGTTACGGCGAGTTCCCTAACATGC
AAAATAACGTTGAAGCGTTAGAAGATGTGTGGGATTACAGCTACAGTCGAGTGCCTTACTACGGCACGAATACACCAATC
GATGAGTGTTATGACTGTGGCTATACCGGTGAGTTTAGCTGTACCAGCAAAGGTTTCACTTGTCCTAAATGTGGCAACCA
TGAACCAAGCCGTGTATCGGTCACTCGCCGCGTATGTGGTTACTTAGGTAGCCCTGACGCGAGACCGTTTAACTACGGCA
AGCAAGAAGAAGTCAAGCGCCGCGTTAAGCACCTGTAG

Upstream 100 bases:

>100_bases
TCCTGTTTTATAGCTTAATGCGCCACATATTGTGATTTATTGAAAAAGTAGCACTATATATAGTGTTGCTTTGATGAGCG
AGCTGAAGAGGAATTAAACA

Downstream 100 bases:

>100_bases
TAAAAATACTAGGGGCTTAGCATGCAAATGGCTAAGCCTGTAGATATTGGGTTTGTGTACATAAAATAAAAGGTGCTGTG
TTCAGCACCTTTTTGTTTTC

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MPVVIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVSQTVAELEEVNIHDLQDSVENLLMEGPHKSLARVY
IEYRHDRDVKREVSSRLNKEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHY
HDLDYAPFFPMFNCMLIDLSGMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQVALTWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMMKVRIAGLGKN
RKTAVFPKLVFAIRDGINHKTGDCNYDIKQLALKCATTRMYPDILNYEQVERVTGSFKTPMGCRSFLGTFEQDGELVHEG
RNNLGVVSLNLPRIALEAKGDEAEFYRILDQRLLIARKGLDTRIARLEGVKARVAPILYMEGACGVRLRADDEISEIFKN
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIEVIKYMKRATENWKKESGYAFSLYSTPSENLCSRFCALDTKVF
GVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPELANGGFICYGEFPNMQNNVEALEDVWDYSYSRVPYYGTNTPI
DECYDCGYTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL

Sequences:

>Translated_705_residues
MPVVIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVSQTVAELEEVNIHDLQDSVENLLMEGPHKSLARVY
IEYRHDRDVKREVSSRLNKEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHY
HDLDYAPFFPMFNCMLIDLSGMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQVALTWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMMKVRIAGLGKN
RKTAVFPKLVFAIRDGINHKTGDCNYDIKQLALKCATTRMYPDILNYEQVERVTGSFKTPMGCRSFLGTFEQDGELVHEG
RNNLGVVSLNLPRIALEAKGDEAEFYRILDQRLLIARKGLDTRIARLEGVKARVAPILYMEGACGVRLRADDEISEIFKN
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIEVIKYMKRATENWKKESGYAFSLYSTPSENLCSRFCALDTKVF
GVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPELANGGFICYGEFPNMQNNVEALEDVWDYSYSRVPYYGTNTPI
DECYDCGYTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL
>Mature_704_residues
PVVIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVSQTVAELEEVNIHDLQDSVENLLMEGPHKSLARVYI
EYRHDRDVKREVSSRLNKEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHYH
DLDYAPFFPMFNCMLIDLSGMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYDK
HYQVALTWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMMKVRIAGLGKNR
KTAVFPKLVFAIRDGINHKTGDCNYDIKQLALKCATTRMYPDILNYEQVERVTGSFKTPMGCRSFLGTFEQDGELVHEGR
NNLGVVSLNLPRIALEAKGDEAEFYRILDQRLLIARKGLDTRIARLEGVKARVAPILYMEGACGVRLRADDEISEIFKNG
RASISLGYIGLHETINALYGTEEHVYDSEMLREKAIEVIKYMKRATENWKKESGYAFSLYSTPSENLCSRFCALDTKVFG
VVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPELANGGFICYGEFPNMQNNVEALEDVWDYSYSRVPYYGTNTPID
ECYDCGYTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=705, Percent_Identity=77.4468085106383, Blast_Score=1167, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 79174; Mature: 79042

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVVIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVSQTVAELEEVNIHDL
CCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QDSVENLLMEGPHKSLARVYIEYRHDRDVKREVSSRLNKEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHYHDLDYAPFFPMFNCMLIDLS
CCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
GMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQVALTWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMMKVRIAGLGKNRKTAVFPKLVFAIRDGINHKTGDCNYDIKQLALKCATTRM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
YPDILNYEQVERVTGSFKTPMGCRSFLGTFEQDGELVHEGRNNLGVVSLNLPRIALEAKG
CHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCEEEEECCC
DEAEFYRILDQRLLIARKGLDTRIARLEGVKARVAPILYMEGACGVRLRADDEISEIFKN
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHCEEEEECCCCCEEEECCHHHHHHHHC
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIEVIKYMKRATENWKKESGYAFSL
CCCEEEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YSTPSENLCSRFCALDTKVFGVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPELA
ECCCHHHHHHHHHHHCHHHHHEECCCEECCEEECEEEEEECCCCCCCCCCCCCCCCHHHC
NGGFICYGEFPNMQNNVEALEDVWDYSYSRVPYYGTNTPIDECYDCGYTGEFSCTSKGFT
CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PVVIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVSQTVAELEEVNIHDL
CEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QDSVENLLMEGPHKSLARVYIEYRHDRDVKREVSSRLNKEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHYHDLDYAPFFPMFNCMLIDLS
CCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
GMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQVALTWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMMKVRIAGLGKNRKTAVFPKLVFAIRDGINHKTGDCNYDIKQLALKCATTRM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
YPDILNYEQVERVTGSFKTPMGCRSFLGTFEQDGELVHEGRNNLGVVSLNLPRIALEAKG
CHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCEEEEECCC
DEAEFYRILDQRLLIARKGLDTRIARLEGVKARVAPILYMEGACGVRLRADDEISEIFKN
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHCEEEEECCCCCEEEECCHHHHHHHHC
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIEVIKYMKRATENWKKESGYAFSL
CCCEEEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YSTPSENLCSRFCALDTKVFGVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPELA
ECCCHHHHHHHHHHHCHHHHHEECCCEECCEEECEEEEEECCCCCCCCCCCCCCCCHHHC
NGGFICYGEFPNMQNNVEALEDVWDYSYSRVPYYGTNTPIDECYDCGYTGEFSCTSKGFT
CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]