Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
---|---|
Accession | NC_009901 |
Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is wzb [C]
Identifier: 157962330
GI number: 157962330
Start: 3058044
End: 3058532
Strand: Reverse
Name: wzb [C]
Synonym: Spea_2509
Alternate gene names: 157962330
Gene position: 3058532-3058044 (Counterclockwise)
Preceding gene: 157962332
Following gene: 157962327
Centisome position: 59.11
GC content: 40.7
Gene sequence:
>489_bases ATGAAACAAATTTCCTCGGTTCTATTTGTATGTATGGGCAACATATGTCGCTCTCCCTCTGCAGAAGCCATGTTCAGATC AAAATCTCTAGCAGCTAGTTTAGATATTAAAATCGATTCAGCGGGAACGATTGCTTTTCATCAAGGGAATTCTCCGGATA AACGATCGATTGCAGCAGGTATTAAGCGAGGTTTAAATTTTGATGGCATGAGAGCTAGGCAGGTTGAGCAAACTGACTTT GCCGATTTTGATTTGATTCTTGCTGCGGATAAACAAAATCTTGAGGACTTGAAGCGAATATGTCCCACAGAGTACCAAGC TAAATTGGCGTTAATTTTAGATTTCTGTGATTTTGACTATCACCAGAAAGCCTATACTGAAGTACCTGATCCATTCTATG GTGCAGGCGACGGTTTTGAGTTAGTTCTGGATTTACTTGAAAACAGCTGTGATCAGCTTGTAAGACGCATCCAAAGAGGC CGTTTGTAA
Upstream 100 bases:
>100_bases TAGCTATCTGAAGTGGAGGGACAAGATAAATGTTACTTTCACAGATGTATGCGAAGATGGCTCATATCGGCTGATATTTA GCCATGATTAAGGTTTTAGT
Downstream 100 bases:
>100_bases CTGGTGAGTGGGTATAGAGAGGCGAGGAGCTAAATAAGCAGTGTTTGTTGCTATTAAGCTTTACTCAGTAAAAGGAAGAG GATTAGATATTAAAAAGGCG
Product: protein tyrosine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MKQISSVLFVCMGNICRSPSAEAMFRSKSLAASLDIKIDSAGTIAFHQGNSPDKRSIAAGIKRGLNFDGMRARQVEQTDF ADFDLILAADKQNLEDLKRICPTEYQAKLALILDFCDFDYHQKAYTEVPDPFYGAGDGFELVLDLLENSCDQLVRRIQRG RL
Sequences:
>Translated_162_residues MKQISSVLFVCMGNICRSPSAEAMFRSKSLAASLDIKIDSAGTIAFHQGNSPDKRSIAAGIKRGLNFDGMRARQVEQTDF ADFDLILAADKQNLEDLKRICPTEYQAKLALILDFCDFDYHQKAYTEVPDPFYGAGDGFELVLDLLENSCDQLVRRIQRG RL >Mature_162_residues MKQISSVLFVCMGNICRSPSAEAMFRSKSLAASLDIKIDSAGTIAFHQGNSPDKRSIAAGIKRGLNFDGMRARQVEQTDF ADFDLILAADKQNLEDLKRICPTEYQAKLALILDFCDFDYHQKAYTEVPDPFYGAGDGFELVLDLLENSCDQLVRRIQRG RL
Specific function: Dephosphorylates Wzc. Required For The Extracellular Polysaccharide Colanic Acid Synthesis. Probably Involved In The Export Of Colanic Acid From The Cell To Medium. [C]
COG id: COG0394
COG function: function code T; Protein-tyrosine-phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the low molecular weight phosphotyrosine protein phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI4757714, Length=147, Percent_Identity=38.7755102040816, Blast_Score=90, Evalue=9e-19, Organism=Homo sapiens, GI6005988, Length=139, Percent_Identity=39.568345323741, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI1788375, Length=148, Percent_Identity=33.1081081081081, Blast_Score=77, Evalue=5e-16, Organism=Escherichia coli, GI87081812, Length=157, Percent_Identity=29.9363057324841, Blast_Score=71, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6325330, Length=154, Percent_Identity=33.7662337662338, Blast_Score=97, Evalue=2e-21, Organism=Drosophila melanogaster, GI78706766, Length=159, Percent_Identity=33.9622641509434, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI78706768, Length=159, Percent_Identity=33.9622641509434, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI78706770, Length=157, Percent_Identity=35.031847133758, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI78706772, Length=157, Percent_Identity=35.031847133758, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI78706764, Length=131, Percent_Identity=35.8778625954198, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI78711846, Length=158, Percent_Identity=31.0126582278481, Blast_Score=67, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000106 - InterPro: IPR017867 [H]
Pfam domain/function: PF01451 LMWPc [H]
EC number: =3.1.3.48 [H]
Molecular weight: Translated: 18117; Mature: 18117
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQISSVLFVCMGNICRSPSAEAMFRSKSLAASLDIKIDSAGTIAFHQGNSPDKRSIAAG CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCCHHHHHHH IKRGLNFDGMRARQVEQTDFADFDLILAADKQNLEDLKRICPTEYQAKLALILDFCDFDY HHHCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCH HQKAYTEVPDPFYGAGDGFELVLDLLENSCDQLVRRIQRGRL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKQISSVLFVCMGNICRSPSAEAMFRSKSLAASLDIKIDSAGTIAFHQGNSPDKRSIAAG CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEECCCCEEEEECCCCCCHHHHHHH IKRGLNFDGMRARQVEQTDFADFDLILAADKQNLEDLKRICPTEYQAKLALILDFCDFDY HHHCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCH HQKAYTEVPDPFYGAGDGFELVLDLLENSCDQLVRRIQRGRL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]