Click here to switch to the map view.

The map label for this gene is rnfA [H]

Identifier: 157962174

GI number: 157962174

Start: 2869229

End: 2869807

Strand: Direct

Name: rnfA [H]

Synonym: Spea_2353

Alternate gene names: 157962174

Gene position: 2869229-2869807 (Clockwise)

Preceding gene: 157962173

Following gene: 157962175

Centisome position: 55.45

GC content: 44.56

Gene sequence:

>579_bases
ATGAGTGAATATCTCCTGTTATTGATTGGCACAGTGCTAGTCAACAACTTCGTATTAGTAAAATTTCTTGGCCTTTGCCC
TTTTATGGGGGTATCTAGCAAGCTTGAGTCGGCTATCGGCATGTCAATGGCGACGACTTTTGTTCTGACGCTAGCCTCAA
TTTTAAGTTATTTGGTCAACCAGTATCTGTTGCTACCTTTTGATCTCGGCTATCTGCGCACCATGAGCTTTATTCTTGTG
ATTGCAGTTGTGGTGCAGTTCACCGAGATGCTGGTTCAAAAAACCAGTGCATCTTTGCATCGCGCCTTAGGTATTTATCT
GCCTTTGATTACCACTAACTGTGCCGTACTCGGTGTCGCCCTCCTCAACATTAATGAAAAGCATGGCTTTATTGAATCTG
CCATATTTGGCTTTGGTGCTGCGGTTGGTTTCTCATTAGTGTTAATTCTTTTCTCTGCCATGCGAGAGCGTCTTGCTGCT
GCCGATGTTCCCACACCTTTTAAAGGTGGGGCCATTGCTATGGTTACCGCAGGACTAATGTCACTCGCGTTTATGGGATT
CACAGGGTTGGTTAAATAA

Upstream 100 bases:

>100_bases
ATTTATAAAGCAAACTTTTTATCCTTGCTTTCTATGTGTTGTTAATGGCTTAGGAAAAGCCGATAATGGAACATATTCTG
TCTAAAAAAATTGATTAGAG

Downstream 100 bases:

>100_bases
ACATGTCAGCTATTGTCATTGCTATTGTTGTACTCACAATACTCGCGCTCGTATTCGGTGTATTGCTGGGCTTTGCTGCC
GAAAAATTTAAAGTTGAAGG

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPFDLGYLRTMSFILV
IAVVVQFTEMLVQKTSASLHRALGIYLPLITTNCAVLGVALLNINEKHGFIESAIFGFGAAVGFSLVLILFSAMRERLAA
ADVPTPFKGGAIAMVTAGLMSLAFMGFTGLVK

Sequences:

>Translated_192_residues
MSEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPFDLGYLRTMSFILV
IAVVVQFTEMLVQKTSASLHRALGIYLPLITTNCAVLGVALLNINEKHGFIESAIFGFGAAVGFSLVLILFSAMRERLAA
ADVPTPFKGGAIAMVTAGLMSLAFMGFTGLVK
>Mature_191_residues
SEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVNQYLLLPFDLGYLRTMSFILVI
AVVVQFTEMLVQKTSASLHRALGIYLPLITTNCAVLGVALLNINEKHGFIESAIFGFGAAVGFSLVLILFSAMRERLAAA
DVPTPFKGGAIAMVTAGLMSLAFMGFTGLVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=73.9583333333333, Blast_Score=295, Evalue=2e-81,
Organism=Escherichia coli, GI1787919, Length=160, Percent_Identity=33.75, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20572; Mature: 20441

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYLLLPFDLGYLRTMSFILVIAVVVQFTEMLVQKTSASLHRALGIYLPLITTNCAVLGVA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNINEKHGFIESAIFGFGAAVGFSLVLILFSAMRERLAAADVPTPFKGGAIAMVTAGLM
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCC
>Mature Secondary Structure 
SEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYLLLPFDLGYLRTMSFILVIAVVVQFTEMLVQKTSASLHRALGIYLPLITTNCAVLGVA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNINEKHGFIESAIFGFGAAVGFSLVLILFSAMRERLAAADVPTPFKGGAIAMVTAGLM
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA