Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
---|---|
Accession | NC_009901 |
Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157961091
Identifier: 157961091
GI number: 157961091
Start: 1533379
End: 1534656
Strand: Direct
Name: 157961091
Synonym: Spea_1263
Alternate gene names: NA
Gene position: 1533379-1534656 (Clockwise)
Preceding gene: 157961088
Following gene: 157961092
Centisome position: 29.63
GC content: 42.88
Gene sequence:
>1278_bases ATGGTTGCACCTAAGAGTCTGATCTTTCAATTGCACCAATACTGGGGAGTCGTTGAACAGTTAACTCGGCTCTCTAGAGA GCATCCAGCCTTTGGGCTCCGAACACTTGAGCAAGTGATTACTCAGTACAAAAGCAAGGACACTGATATTAATACGGTAT TGGGTAGTTTGATTAATGCAGAGATACTGCAATCGATCAATCGGACCAATGACTATCAGCTCAATACCTTAGTGGTGGAC TTCGTCAGAGGACTGACTCAGGAACATGAACTAGGTTTATCGGCAGTGCTCAAGGCTCGTGTTGATGCAATCAAGCATGC TACAAGCCAAGTTTTAAGGGGGTTGGAGGATTCGGATAATGACTTACTTCGCTCAGGGGCTAACCAACTTTCAGAACTAG TCAGAAAGATCGCACAGCAGCTGAGTCAAGACAAACTGGCTATCTTTGAAATTGCTGAATTAGCGAAGTCTGCAGATACT AATGTGCCTATAGAGCGGCGTTATCGCGAAGTATTGGAAGTGTACGACCAATACGTCGAGCCGATGAATGAAATGATGGA TAGCGGGCTTGGTGGTAGTTTTTATCCCTTATTAGAGAATGCTGAGTTTACTTTGGATAGAGTTGTAGAGATGCTTTCAA TTCGTGGTTCTTTGTACCAACAACGACTTGCAATACGCCAGATTGCTTACCAAGTTAAAGACCTTCGATATCAAGGACGT ATCATCGCTCAGCAATGTGCAGACAATCTGCTTCCATTGAGAGAGGAGGCTCGGCAGCACAACCAACTCTCTGCAGCCAT CAGCAAGCAAATTAGCGCAGTTCGAAAAAAAGGTCTAGCTCGTGGTCTTGAAGGTAATGGCTTACCAATGTGGAAAAGTG GCCGTTCGACAAAGGTTCAATTGGGAAATGAAGTGCGTGAACTGATGGCTGAGTTTATAAACTTTGAACCTAGCACGATT CCTTTTCCCGATGAAGAAATTGCGCCAAGTAGTCCATTAATCAGCTGGGTAGATGAAGATTATCTCCTGAAACAACTCCT CAACGCACTACCGATATACAATCTTATGGTTTGGCTCAAAGACAATTATCAATATTTGCCAGATGCAGAGCTATTACGTC TTTATCATGAGCTTGTTCGAGATAAGCAATGGGAAAGTATCCTTAGTTCTAATGTAGATACCACTGCGCTGAACACCGTA TATGTAACTTATTACCCTCATGAAATAACTCTTTTAGATAGCTCAACAGTTGTAAAGGAGAATGTAAATGCAAGATAG
Upstream 100 bases:
>100_bases TCGTTATTGGCGTCATAGTATTGTTTCAGGTATCTAGCAGTCAATAGATAAAAGATAAGGCTGGAGATATAGTTAATTTA ACAAAGAAGAGTATTAACGC
Downstream 100 bases:
>100_bases CAAAATCGACTTAAGTGAGCTGGCTTATCTCACAGAGCTTTTTGACCTGTTTAATTCAGGGCGTCATCTTAATCGCTCGT CTGATGCGACGTTGTGGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MVAPKSLIFQLHQYWGVVEQLTRLSREHPAFGLRTLEQVITQYKSKDTDINTVLGSLINAEILQSINRTNDYQLNTLVVD FVRGLTQEHELGLSAVLKARVDAIKHATSQVLRGLEDSDNDLLRSGANQLSELVRKIAQQLSQDKLAIFEIAELAKSADT NVPIERRYREVLEVYDQYVEPMNEMMDSGLGGSFYPLLENAEFTLDRVVEMLSIRGSLYQQRLAIRQIAYQVKDLRYQGR IIAQQCADNLLPLREEARQHNQLSAAISKQISAVRKKGLARGLEGNGLPMWKSGRSTKVQLGNEVRELMAEFINFEPSTI PFPDEEIAPSSPLISWVDEDYLLKQLLNALPIYNLMVWLKDNYQYLPDAELLRLYHELVRDKQWESILSSNVDTTALNTV YVTYYPHEITLLDSSTVVKENVNAR
Sequences:
>Translated_425_residues MVAPKSLIFQLHQYWGVVEQLTRLSREHPAFGLRTLEQVITQYKSKDTDINTVLGSLINAEILQSINRTNDYQLNTLVVD FVRGLTQEHELGLSAVLKARVDAIKHATSQVLRGLEDSDNDLLRSGANQLSELVRKIAQQLSQDKLAIFEIAELAKSADT NVPIERRYREVLEVYDQYVEPMNEMMDSGLGGSFYPLLENAEFTLDRVVEMLSIRGSLYQQRLAIRQIAYQVKDLRYQGR IIAQQCADNLLPLREEARQHNQLSAAISKQISAVRKKGLARGLEGNGLPMWKSGRSTKVQLGNEVRELMAEFINFEPSTI PFPDEEIAPSSPLISWVDEDYLLKQLLNALPIYNLMVWLKDNYQYLPDAELLRLYHELVRDKQWESILSSNVDTTALNTV YVTYYPHEITLLDSSTVVKENVNAR >Mature_425_residues MVAPKSLIFQLHQYWGVVEQLTRLSREHPAFGLRTLEQVITQYKSKDTDINTVLGSLINAEILQSINRTNDYQLNTLVVD FVRGLTQEHELGLSAVLKARVDAIKHATSQVLRGLEDSDNDLLRSGANQLSELVRKIAQQLSQDKLAIFEIAELAKSADT NVPIERRYREVLEVYDQYVEPMNEMMDSGLGGSFYPLLENAEFTLDRVVEMLSIRGSLYQQRLAIRQIAYQVKDLRYQGR IIAQQCADNLLPLREEARQHNQLSAAISKQISAVRKKGLARGLEGNGLPMWKSGRSTKVQLGNEVRELMAEFINFEPSTI PFPDEEIAPSSPLISWVDEDYLLKQLLNALPIYNLMVWLKDNYQYLPDAELLRLYHELVRDKQWESILSSNVDTTALNTV YVTYYPHEITLLDSSTVVKENVNAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48511; Mature: 48511
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAPKSLIFQLHQYWGVVEQLTRLSREHPAFGLRTLEQVITQYKSKDTDINTVLGSLINA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EILQSINRTNDYQLNTLVVDFVRGLTQEHELGLSAVLKARVDAIKHATSQVLRGLEDSDN HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH DLLRSGANQLSELVRKIAQQLSQDKLAIFEIAELAKSADTNVPIERRYREVLEVYDQYVE HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH PMNEMMDSGLGGSFYPLLENAEFTLDRVVEMLSIRGSLYQQRLAIRQIAYQVKDLRYQGR HHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH IIAQQCADNLLPLREEARQHNQLSAAISKQISAVRKKGLARGLEGNGLPMWKSGRSTKVQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH LGNEVRELMAEFINFEPSTIPFPDEEIAPSSPLISWVDEDYLLKQLLNALPIYNLMVWLK HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCHHHHHHHHC DNYQYLPDAELLRLYHELVRDKQWESILSSNVDTTALNTVYVTYYPHEITLLDSSTVVKE CCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEEEEEECCEEEEECCCHHHHC NVNAR CCCCC >Mature Secondary Structure MVAPKSLIFQLHQYWGVVEQLTRLSREHPAFGLRTLEQVITQYKSKDTDINTVLGSLINA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EILQSINRTNDYQLNTLVVDFVRGLTQEHELGLSAVLKARVDAIKHATSQVLRGLEDSDN HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH DLLRSGANQLSELVRKIAQQLSQDKLAIFEIAELAKSADTNVPIERRYREVLEVYDQYVE HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH PMNEMMDSGLGGSFYPLLENAEFTLDRVVEMLSIRGSLYQQRLAIRQIAYQVKDLRYQGR HHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH IIAQQCADNLLPLREEARQHNQLSAAISKQISAVRKKGLARGLEGNGLPMWKSGRSTKVQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH LGNEVRELMAEFINFEPSTIPFPDEEIAPSSPLISWVDEDYLLKQLLNALPIYNLMVWLK HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCHHHHHHHHC DNYQYLPDAELLRLYHELVRDKQWESILSSNVDTTALNTVYVTYYPHEITLLDSSTVVKE CCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEEEEEECCEEEEECCCHHHHC NVNAR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA