Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is 157961078
Identifier: 157961078
GI number: 157961078
Start: 1523743
End: 1524276
Strand: Direct
Name: 157961078
Synonym: Spea_1250
Alternate gene names: NA
Gene position: 1523743-1524276 (Clockwise)
Preceding gene: 157961076
Following gene: 157961079
Centisome position: 29.45
GC content: 41.39
Gene sequence:
>534_bases ATGAGCCGTATTCTTCCAGTATCAAATCCACCAGGTGATGTAGCGACGACGTTAGCAGCAATCAAAAGTAAGTTAGGAAT GGTACCTAACCTTTATGCGACCATTGGTCATTCATCCACGGTGCTTAATGCGTACCTTGCATTTAGTGATGCTTTATCCA AAGGACGTTTAAGCGCGAAACAGCGAGAGTTAATCGCTTTGGCGATAGCTCAGGTAAATCAGTGTCAGTATTGCTTATCT GCTCATACCCTTATTGCTGGTAATACTGGATTAGCAAAACATCATATCAAGGAAGCAAGACAAGCTAAGGCTGATAACGC GTTGGATCAAGCACTGATTACCTTAGCCGTAGATTTGGTTGAGCAGCGTGGAGAGCTCACTACAGAACAATTAGATATAG CTAATGAAAATGGAGTTGATAGCGAGTTGATCTTTGAGGTGCTAGGCCTAGTGACGGCTAATATATTTACCAATTATGCA AATCATTTAGCACAAACAGATATTGATTTTCCAGAAGTAAGCCTTACGGTTTGA
Upstream 100 bases:
>100_bases TGAGACTCTGGGTATGTATATCGAGATTAATAGTGATAAATCGTATTACTGATAGTGTCAATATCAATATCGTAAATTCA CTTAATCAAAGGAGCTCAGC
Downstream 100 bases:
>100_bases TATTGAAAGGAGCCATTTATGCAGCAGGAAAGAGGTTATTTAGTCGGTCTAGCAGGTGTTGTACTTACGCTATTATGGAT TGGTGTATTTAAGTTTACTC
Product: alkylhydroperoxidase
Products: NA
Alternate protein names: Alkylhydroperoxidase Like Protein AhpD Family; Alkylhydroperoxidase AhpD Core; Peroxidase-Related; Carboxymuconolactone Decarboxylase; 4-Carboxymuconolactone Decarboxylase; Alkylhydroperoxidase AhpD Family Core Domain Protein; Carboxymuconolactone Decarboxylase Family Protein; Alkylhydroperoxidase AhpD; Alkylhydroperoxidase-Like Protein AhpD Family; Alpha/Beta Hydrolase; 24 KDa Macrophage-Induced Protein; Carboxymuconolactone Decarboxylase Family; Alkylhydroperoxidase-Like Protein; Mip Protein; MIP-(Macrophage Infectivity Potentiator)-Like Protein; AhpD-Like Alkylhydroperoxidase; Macrophage Infectivity Potentiator-Related Protein; Antioxydant Protein; Peroxidase; Alkylhydroperoxidase AhpD Family Protein; Alkylhydroperoxidase AhpD Family Core Domain Protein MED; Peroxidase-Like Protein; Alkylhydroperoxidase Like Protein AhpD Family Protein
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MSRILPVSNPPGDVATTLAAIKSKLGMVPNLYATIGHSSTVLNAYLAFSDALSKGRLSAKQRELIALAIAQVNQCQYCLS AHTLIAGNTGLAKHHIKEARQAKADNALDQALITLAVDLVEQRGELTTEQLDIANENGVDSELIFEVLGLVTANIFTNYA NHLAQTDIDFPEVSLTV
Sequences:
>Translated_177_residues MSRILPVSNPPGDVATTLAAIKSKLGMVPNLYATIGHSSTVLNAYLAFSDALSKGRLSAKQRELIALAIAQVNQCQYCLS AHTLIAGNTGLAKHHIKEARQAKADNALDQALITLAVDLVEQRGELTTEQLDIANENGVDSELIFEVLGLVTANIFTNYA NHLAQTDIDFPEVSLTV >Mature_176_residues SRILPVSNPPGDVATTLAAIKSKLGMVPNLYATIGHSSTVLNAYLAFSDALSKGRLSAKQRELIALAIAQVNQCQYCLSA HTLIAGNTGLAKHHIKEARQAKADNALDQALITLAVDLVEQRGELTTEQLDIANENGVDSELIFEVLGLVTANIFTNYAN HLAQTDIDFPEVSLTV
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18939; Mature: 18808
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRILPVSNPPGDVATTLAAIKSKLGMVPNLYATIGHSSTVLNAYLAFSDALSKGRLSAK CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH QRELIALAIAQVNQCQYCLSAHTLIAGNTGLAKHHIKEARQAKADNALDQALITLAVDLV HHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQRGELTTEQLDIANENGVDSELIFEVLGLVTANIFTNYANHLAQTDIDFPEVSLTV HHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC >Mature Secondary Structure SRILPVSNPPGDVATTLAAIKSKLGMVPNLYATIGHSSTVLNAYLAFSDALSKGRLSAK CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH QRELIALAIAQVNQCQYCLSAHTLIAGNTGLAKHHIKEARQAKADNALDQALITLAVDLV HHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQRGELTTEQLDIANENGVDSELIFEVLGLVTANIFTNYANHLAQTDIDFPEVSLTV HHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA