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The map label for this gene is algU [H]

Identifier: 157961040

GI number: 157961040

Start: 1475962

End: 1476579

Strand: Direct

Name: algU [H]

Synonym: Spea_1212

Alternate gene names: 157961040

Gene position: 1475962-1476579 (Clockwise)

Preceding gene: 157961039

Following gene: 157961041

Centisome position: 28.52

GC content: 43.85

Gene sequence:

>618_bases
GTGGAGCAACCCTTGCCCTCAGATGATAAATCTAGTGAGGTCGATTCTGATCAAGCCTTGATGTTGCAATACGCCGCAGG
CAGCACTCGAGCTTTTGAGCTACTTTACAATAAGCACAAAGGTTCGCTATATCGCTATTTCGTTCGGCAAATTTATGATC
AACAGTTAGCAGAAGACCTCTATCAGGAAACTTGGAGTCGAGTGATAAAGGCGGCCAGCAGTTATGAAACCAGCGCGAAA
TTTACCACTTGGCTATATCGTATCGCTCATAACCTCATTATTGACCATGTTAGGGCACTTAAGCCGGTGAATAACTTCAG
TGAAGTATTCGAGGCAGAGCAAGACGTTGAGACACAGCTAAGTAACGATGATTTTAACCCTGAAGGGCAAATGTTAGACA
ATCAAAAAGCAATCTTGCTTAAAGGCTGTGTTGCTAACTTACCTCAAGTGCAGAAAGAGGCGTTTGTGCTAAACGTCGAG
ATGGGTTTTACCGCTGCGATTATTGCCGATATTGCTGGAGCGACATTAGAAGCAACAAAGAGCCGTATTCGTTATGCCTA
TAAGGGGCTTAAAGATTGCGTAGACTTAAAATGGCAAGGAGCTGAGCATGACAGATAA

Upstream 100 bases:

>100_bases
TAGGTGGCATTTTTTATGCCTGTTAAACTTGTATAACTAGACAATAGTCTGCCTAGGATGCAGACTCAATAAGCGAAAAA
ATTAAGCTAAGGAAGATACC

Downstream 100 bases:

>100_bases
AGAGCATGAAGCAGTTGAGGCTGAAATTAAGTCGCTTTATCAACAAATCGATAAAGAGCAGCCTTCGAGTCAGCTAGATG
AACAGATCTTAACTATGGCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQPLPSDDKSSEVDSDQALMLQYAAGSTRAFELLYNKHKGSLYRYFVRQIYDQQLAEDLYQETWSRVIKAASSYETSAK
FTTWLYRIAHNLIIDHVRALKPVNNFSEVFEAEQDVETQLSNDDFNPEGQMLDNQKAILLKGCVANLPQVQKEAFVLNVE
MGFTAAIIADIAGATLEATKSRIRYAYKGLKDCVDLKWQGAEHDR

Sequences:

>Translated_205_residues
MEQPLPSDDKSSEVDSDQALMLQYAAGSTRAFELLYNKHKGSLYRYFVRQIYDQQLAEDLYQETWSRVIKAASSYETSAK
FTTWLYRIAHNLIIDHVRALKPVNNFSEVFEAEQDVETQLSNDDFNPEGQMLDNQKAILLKGCVANLPQVQKEAFVLNVE
MGFTAAIIADIAGATLEATKSRIRYAYKGLKDCVDLKWQGAEHDR
>Mature_205_residues
MEQPLPSDDKSSEVDSDQALMLQYAAGSTRAFELLYNKHKGSLYRYFVRQIYDQQLAEDLYQETWSRVIKAASSYETSAK
FTTWLYRIAHNLIIDHVRALKPVNNFSEVFEAEQDVETQLSNDDFNPEGQMLDNQKAILLKGCVANLPQVQKEAFVLNVE
MGFTAAIIADIAGATLEATKSRIRYAYKGLKDCVDLKWQGAEHDR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23353; Mature: 23353

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQPLPSDDKSSEVDSDQALMLQYAAGSTRAFELLYNKHKGSLYRYFVRQIYDQQLAEDL
CCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YQETWSRVIKAASSYETSAKFTTWLYRIAHNLIIDHVRALKPVNNFSEVFEAEQDVETQL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SNDDFNPEGQMLDNQKAILLKGCVANLPQVQKEAFVLNVEMGFTAAIIADIAGATLEATK
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHEEEEECCCHHHHHHHHHHCCHHHHHH
SRIRYAYKGLKDCVDLKWQGAEHDR
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEQPLPSDDKSSEVDSDQALMLQYAAGSTRAFELLYNKHKGSLYRYFVRQIYDQQLAEDL
CCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YQETWSRVIKAASSYETSAKFTTWLYRIAHNLIIDHVRALKPVNNFSEVFEAEQDVETQL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SNDDFNPEGQMLDNQKAILLKGCVANLPQVQKEAFVLNVEMGFTAAIIADIAGATLEATK
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHEEEEECCCHHHHHHHHHHCCHHHHHH
SRIRYAYKGLKDCVDLKWQGAEHDR
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]