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The map label for this gene is nlpD [H]

Identifier: 157961020

GI number: 157961020

Start: 1446069

End: 1446959

Strand: Direct

Name: nlpD [H]

Synonym: Spea_1192

Alternate gene names: 157961020

Gene position: 1446069-1446959 (Clockwise)

Preceding gene: 157961019

Following gene: 157961021

Centisome position: 27.95

GC content: 41.86

Gene sequence:

>891_bases
ATGAGGTTCGTTTACTATTATTGTGTCTACGTGGTGCTGCTTTCTGGCTGTAGTTTTCAGGCAGATAGACCTGCACCTGT
AGAATCTATTAACGGTCCCCAAACTCCGTCGATCACCAAAGGATCGATTACAGGAAGTCGTTATATCGTAAAAAATGGTG
ATACTCTCTACTCTATCGCCTGGGGAGCAAATAAAGATTTTGTTGATATTGCAAAGCAAAATCGTCTGCCAAAGCCTTAT
ACCATCTACCCTGGACAAGTATTGAGTCTTAGCTCTAAAAGATATGTTACAAATAGCCAAAGCGCCAAAAAAACGACGAA
TTCAAGCATTAAAACCACTGCCGTTAATAGTAATAATACACAAAAACAAGTGGTTAGTGCTAAACCATCTACCGTCTCCA
GCCAGAATCAAGGGTCAAAAAAACAACTTGATCCTGTCGCCAAGCCTGCGTACTCTGTAACAAGTAGTCAACAAGATGCT
AACCGAATTATCCACAAGCCTGTCGAGCTTCCAAAGAAAGTAAGCCGCTGGTCATGGCCTGTGAAAGGTAAGGTGATTGG
AACTTTCTCCGCCAAAGAGCAGGGAAATAAAGGGATAAAGATCGCAGGTAACCGAGGTGATGTGATTCGAGCTGCTGCAA
GTGGTCGAGTCGTTTACGCTGGTAGTGCACTTCGGGGGTACGGTAACTTAGTTATCATTAAGCATAGTGATGATTATCTA
AGTGCTTATGCTCATGCTGATAAGATCTCAGTTAAGGAAAAGCAACTTGTTAGTGTTGGACAGACAGTTGCGACAATGGG
TAGTACTGGTACAAATCGGGTCATGTTACATTTTGAGATCCGATATCATGGAAAGTCAGTTAATCCTGTTAAATTTTTGC
CTAAACAATAG

Upstream 100 bases:

>100_bases
CGAGCTGGCATAGGCATTTTTACACGGGCTTATCGAGCCAGCAATCAAGTAATAATTAAATAGTGTCGACAACAGGGTAA
TTTGGGGTGAAGAGTTAACA

Downstream 100 bases:

>100_bases
TTGTTGGGCCGCCATTTTGGCAAATCGGAGGATAGTGAAGTGCAGTAATTTAATGTGAAAATTTGGGAGAAATATTATGG
GCAGATTAAATAGTGCCGTT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRFVYYYCVYVVLLSGCSFQADRPAPVESINGPQTPSITKGSITGSRYIVKNGDTLYSIAWGANKDFVDIAKQNRLPKPY
TIYPGQVLSLSSKRYVTNSQSAKKTTNSSIKTTAVNSNNTQKQVVSAKPSTVSSQNQGSKKQLDPVAKPAYSVTSSQQDA
NRIIHKPVELPKKVSRWSWPVKGKVIGTFSAKEQGNKGIKIAGNRGDVIRAAASGRVVYAGSALRGYGNLVIIKHSDDYL
SAYAHADKISVKEKQLVSVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ

Sequences:

>Translated_296_residues
MRFVYYYCVYVVLLSGCSFQADRPAPVESINGPQTPSITKGSITGSRYIVKNGDTLYSIAWGANKDFVDIAKQNRLPKPY
TIYPGQVLSLSSKRYVTNSQSAKKTTNSSIKTTAVNSNNTQKQVVSAKPSTVSSQNQGSKKQLDPVAKPAYSVTSSQQDA
NRIIHKPVELPKKVSRWSWPVKGKVIGTFSAKEQGNKGIKIAGNRGDVIRAAASGRVVYAGSALRGYGNLVIIKHSDDYL
SAYAHADKISVKEKQLVSVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ
>Mature_296_residues
MRFVYYYCVYVVLLSGCSFQADRPAPVESINGPQTPSITKGSITGSRYIVKNGDTLYSIAWGANKDFVDIAKQNRLPKPY
TIYPGQVLSLSSKRYVTNSQSAKKTTNSSIKTTAVNSNNTQKQVVSAKPSTVSSQNQGSKKQLDPVAKPAYSVTSSQQDA
NRIIHKPVELPKKVSRWSWPVKGKVIGTFSAKEQGNKGIKIAGNRGDVIRAAASGRVVYAGSALRGYGNLVIIKHSDDYL
SAYAHADKISVKEKQLVSVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=301, Percent_Identity=42.8571428571429, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI87082174, Length=285, Percent_Identity=36.8421052631579, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=35.5371900826446, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32264; Mature: 32264

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFVYYYCVYVVLLSGCSFQADRPAPVESINGPQTPSITKGSITGSRYIVKNGDTLYSIA
CEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEEEEEE
WGANKDFVDIAKQNRLPKPYTIYPGQVLSLSSKRYVTNSQSAKKTTNSSIKTTAVNSNNT
ECCCCCHHHHHHHCCCCCCEEECCCCEEEECCCEEECCCCHHHHCCCCCEEEEEECCCCC
QKQVVSAKPSTVSSQNQGSKKQLDPVAKPAYSVTSSQQDANRIIHKPVELPKKVSRWSWP
HHHEEECCCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCC
VKGKVIGTFSAKEQGNKGIKIAGNRGDVIRAAASGRVVYAGSALRGYGNLVIIKHSDDYL
CCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEECCEECCCCCEEEEEECCHHH
SAYAHADKISVKEKQLVSVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEECCCCC
>Mature Secondary Structure
MRFVYYYCVYVVLLSGCSFQADRPAPVESINGPQTPSITKGSITGSRYIVKNGDTLYSIA
CEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEEEEEE
WGANKDFVDIAKQNRLPKPYTIYPGQVLSLSSKRYVTNSQSAKKTTNSSIKTTAVNSNNT
ECCCCCHHHHHHHCCCCCCEEECCCCEEEECCCEEECCCCHHHHCCCCCEEEEEECCCCC
QKQVVSAKPSTVSSQNQGSKKQLDPVAKPAYSVTSSQQDANRIIHKPVELPKKVSRWSWP
HHHEEECCCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCC
VKGKVIGTFSAKEQGNKGIKIAGNRGDVIRAAASGRVVYAGSALRGYGNLVIIKHSDDYL
CCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEECCEECCCCCEEEEEECCHHH
SAYAHADKISVKEKQLVSVGQTVATMGSTGTNRVMLHFEIRYHGKSVNPVKFLPKQ
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]