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The map label for this gene is yhjC [H]

Identifier: 157961006

GI number: 157961006

Start: 1428958

End: 1429860

Strand: Direct

Name: yhjC [H]

Synonym: Spea_1178

Alternate gene names: 157961006

Gene position: 1428958-1429860 (Clockwise)

Preceding gene: 157961003

Following gene: 157961009

Centisome position: 27.61

GC content: 45.85

Gene sequence:

>903_bases
ATGAGTACCAACTTTGGATTGGAATTGCAGCTGATCTATCAATTTGTGCATCTGGTGAATGCAGGCAGTTTTTCTCAAGC
TGCTAAAGAGCTAGATATGCCAATAGCGACAGTTAGCCGTAAGTTGACCAAGTTGGAAACTGTGTTAGATAAACAGCTGC
TGATGCGCAATACCCGTAAGCTTAGGCTAACCGAGGAGGGCATAGCACTGTTTCAGCAATATCAGTCGATTATCTCTCAG
TTTGATAGCATTAGCGGGCTCAGTGTGGATAAGCCTGAGGGCACGCTACGCATAGCAGCACCAGTATCGATTGTCTCGAT
GATTTTTATTAAGACGCTCAATGAGTTCTGCGAGCAGTATCCCGATATTCAGCTACATATTGCACAAAACAATAACGTGA
TTGACTTGATTGATGAGGGCGTGGATGTCGCCATCGTCGGCGGTACTCAGCCAGATTCTTCTTGGATCTCTAGCTCCTTG
GGCGTACTGAATTACGGCTTATTTGCTTCACCTGAGTATATCAACAAGGCGCCGGTATTAACGCATCCTGGTGAGTTGGA
AAACCACGATTTGATTAAGGTGTGGCCTCTGTATAACTGGTCGCTTAAGCACCCATCTGGGGAGTCATTTTACTACGATG
GTAAGGCTAAGCTGACCTTAAGTGACTTGCATGGTGCGGTTGAGGCTACGGTTGACGATGGTGGCATTCTCTATGGCCCC
GAGCTTTTCGTTAAGAAAGAGCTTAAATCGGGCGCGTTACAAGCCTTGCTGCCTCAGTGGATTGGAGAGAAGAGACGCAT
TTCAATTTTGTATCATCAGCGCAGTCATCAGCCATTAAAGGTGAAACTGTTCATCGAGTTTATGCAGTCAAAGGCTGGTA
GTCTGTTTTCGATGACAAGTTAA

Upstream 100 bases:

>100_bases
AAAGCCGATAATATTGAGCTAGAACACTATCCCATTTATGCTTTGGTATAATATTACGGCTAGCTTTAGCTCACTTTTTT
TAGTAGCAGGATATATATTG

Downstream 100 bases:

>100_bases
CGGGCTTAAACCTGTTACAAAAAAGCGCACAAGGTGATTAACCTTATGCGCTTTAGAGTGATCGTGCTTCAGACATTTAA
GTATGGCTGATTAGACTTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSTNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQYQSIISQ
FDSISGLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQYPDIQLHIAQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSL
GVLNYGLFASPEYINKAPVLTHPGELENHDLIKVWPLYNWSLKHPSGESFYYDGKAKLTLSDLHGAVEATVDDGGILYGP
ELFVKKELKSGALQALLPQWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAGSLFSMTS

Sequences:

>Translated_300_residues
MSTNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQYQSIISQ
FDSISGLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQYPDIQLHIAQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSL
GVLNYGLFASPEYINKAPVLTHPGELENHDLIKVWPLYNWSLKHPSGESFYYDGKAKLTLSDLHGAVEATVDDGGILYGP
ELFVKKELKSGALQALLPQWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAGSLFSMTS
>Mature_299_residues
STNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQYQSIISQF
DSISGLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQYPDIQLHIAQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSLG
VLNYGLFASPEYINKAPVLTHPGELENHDLIKVWPLYNWSLKHPSGESFYYDGKAKLTLSDLHGAVEATVDDGGILYGPE
LFVKKELKSGALQALLPQWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAGSLFSMTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=284, Percent_Identity=28.169014084507, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=27.6094276094276, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786401, Length=281, Percent_Identity=29.1814946619217, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=24.5674740484429, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=26.1744966442953, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=23.728813559322, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788706, Length=268, Percent_Identity=26.865671641791, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786448, Length=253, Percent_Identity=24.901185770751, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=276, Percent_Identity=23.9130434782609, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33514; Mature: 33383

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRK
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
LRLTEEGIALFQQYQSIISQFDSISGLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQY
EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHC
PDIQLHIAQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSLGVLNYGLFASPEYINKAPVL
CCEEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCE
THPGELENHDLIKVWPLYNWSLKHPSGESFYYDGKAKLTLSDLHGAVEATVDDGGILYGP
ECCCCCCCCCEEEEEEEEEEEECCCCCCCEEECCCEEEEHHHHCCEEEEEECCCCEEECC
ELFVKKELKSGALQALLPQWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAGSLFSMTS
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
STNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRK
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
LRLTEEGIALFQQYQSIISQFDSISGLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQY
EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHC
PDIQLHIAQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSLGVLNYGLFASPEYINKAPVL
CCEEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCE
THPGELENHDLIKVWPLYNWSLKHPSGESFYYDGKAKLTLSDLHGAVEATVDDGGILYGP
ECCCCCCCCCEEEEEEEEEEEECCCCCCCEEECCCEEEEHHHHCCEEEEEECCCCEEECC
ELFVKKELKSGALQALLPQWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAGSLFSMTS
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]